Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_O06
(895 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor ga... 36 0.15
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 36 0.15
AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein. 36 0.15
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 35 0.35
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 35 0.35
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 35 0.35
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 35 0.35
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 35 0.35
X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor de... 33 1.8
BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor, n... 33 1.8
BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor, n... 33 1.8
AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein. 33 1.8
X14830-1|CAA32939.1| 501|Homo sapiens protein ( Human mRNA for ... 32 3.2
BC023553-1|AAH23553.1| 501|Homo sapiens cholinergic receptor, n... 32 3.2
BC011371-1|AAH11371.1| 501|Homo sapiens cholinergic receptor, n... 32 3.2
Y08419-1|CAA69696.1| 468|Homo sapiens nicotinic acetylcholine r... 31 7.5
U62434-1|AAB40112.1| 468|Homo sapiens nicotinic acetylcholine r... 31 7.5
M83712-1|AAA58357.1| 468|Homo sapiens nicotinic receptor alpha ... 31 7.5
BC033639-1|AAH33639.1| 468|Homo sapiens cholinergic receptor, n... 31 7.5
AJ306481-1|CAC34820.1| 468|Homo sapiens neuronal nicotinic acet... 31 7.5
>X01715-1|CAA25861.1| 520|Homo sapiens acetylcholine receptor gamma
chain precursor protein.
Length = 520
Score = 36.3 bits (80), Expect = 0.15
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 179 VVNLTLHLTHANI---RESESTVRIQADLQMNWIDKRLSWNPGEW-GCXTWLVSSXRLXR 346
VVN++L LT N+ E E + ++M W D RL W+P ++ G V S + R
Sbjct: 53 VVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLRWDPRDYEGLWVLRVPSTMVWR 112
Query: 347 P 349
P
Sbjct: 113 P 113
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 36.3 bits (80), Expect = 0.15
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 179 VVNLTLHLTHANI---RESESTVRIQADLQMNWIDKRLSWNPGEW-GCXTWLVSSXRLXR 346
VVN++L LT N+ E E + ++M W D RL W+P ++ G V S + R
Sbjct: 50 VVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLRWDPRDYEGLWVLRVPSTMVWR 109
Query: 347 P 349
P
Sbjct: 110 P 110
>AC092165-3|AAY24103.1| 520|Homo sapiens unknown protein.
Length = 520
Score = 36.3 bits (80), Expect = 0.15
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 179 VVNLTLHLTHANI---RESESTVRIQADLQMNWIDKRLSWNPGEW-GCXTWLVSSXRLXR 346
VVN++L LT N+ E E + ++M W D RL W+P ++ G V S + R
Sbjct: 53 VVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLRWDPRDYEGLWVLRVPSTMVWR 112
Query: 347 P 349
P
Sbjct: 113 P 113
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 35.1 bits (77), Expect = 0.35
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 158 PPPDSKIVVNLTLHLTHA---NIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-V 325
P D + VV +T+ L N+ E V L+ W+D L WNP ++G + +
Sbjct: 41 PVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI 100
Query: 326 SSXRLXRP 349
S ++ RP
Sbjct: 101 PSEKIWRP 108
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 35.1 bits (77), Expect = 0.35
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 158 PPPDSKIVVNLTLHLTHA---NIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-V 325
P D + VV +T+ L N+ E V L+ W+D L WNP ++G + +
Sbjct: 41 PVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI 100
Query: 326 SSXRLXRP 349
S ++ RP
Sbjct: 101 PSEKIWRP 108
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 35.1 bits (77), Expect = 0.35
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 158 PPPDSKIVVNLTLHLTHA---NIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-V 325
P D + VV +T+ L N+ E V L+ W+D L WNP ++G + +
Sbjct: 41 PVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI 100
Query: 326 SSXRLXRP 349
S ++ RP
Sbjct: 101 PSEKIWRP 108
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 35.1 bits (77), Expect = 0.35
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 158 PPPDSKIVVNLTLHLTHA---NIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-V 325
P D + VV +T+ L N+ E V L+ W+D L WNP ++G + +
Sbjct: 41 PVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI 100
Query: 326 SSXRLXRP 349
S ++ RP
Sbjct: 101 PSEKIWRP 108
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 35.1 bits (77), Expect = 0.35
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 158 PPPDSKIVVNLTLHLTHA---NIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-V 325
P D + VV +T+ L N+ E V L+ W+D L WNP ++G + +
Sbjct: 41 PVEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI 100
Query: 326 SSXRLXRP 349
S ++ RP
Sbjct: 101 PSEKIWRP 108
>X55019-1|CAA38759.1| 517|Homo sapiens acetylcholine receptor delta
subunit protein.
Length = 517
Score = 32.7 bits (71), Expect = 1.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 182 VNLTLHLTHANI---RESESTVRIQADLQMNWIDKRLSWNPGEWG 307
V++ L LT +N+ +E E T+ ++ W D RL WN E+G
Sbjct: 52 VDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>BC093925-1|AAH93925.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 32.7 bits (71), Expect = 1.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 182 VNLTLHLTHANI---RESESTVRIQADLQMNWIDKRLSWNPGEWG 307
V++ L LT +N+ +E E T+ ++ W D RL WN E+G
Sbjct: 52 VDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>BC093923-1|AAH93923.1| 517|Homo sapiens cholinergic receptor,
nicotinic, delta protein.
Length = 517
Score = 32.7 bits (71), Expect = 1.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 182 VNLTLHLTHANI---RESESTVRIQADLQMNWIDKRLSWNPGEWG 307
V++ L LT +N+ +E E T+ ++ W D RL WN E+G
Sbjct: 52 VDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>AC092165-2|AAY24102.1| 517|Homo sapiens unknown protein.
Length = 517
Score = 32.7 bits (71), Expect = 1.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 182 VNLTLHLTHANI---RESESTVRIQADLQMNWIDKRLSWNPGEWG 307
V++ L LT +N+ +E E T+ ++ W D RL WN E+G
Sbjct: 52 VDVALALTLSNLISLKEVEETLTTNVWIEHGWTDNRLKWNAEEFG 96
>X14830-1|CAA32939.1| 501|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor beta-subunit. ).
Length = 501
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 173 KIVVNLTL-HLTHANIRESESTVRIQADLQMNWIDKRLSWNPGE 301
++ V L L L N ++ E + ++ DL+ W D RLSW+P E
Sbjct: 53 RVSVGLILAQLISLNEKDEEMSTKVYLDLE--WTDYRLSWDPAE 94
>BC023553-1|AAH23553.1| 501|Homo sapiens cholinergic receptor,
nicotinic, beta 1 (muscle) protein.
Length = 501
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 173 KIVVNLTL-HLTHANIRESESTVRIQADLQMNWIDKRLSWNPGE 301
++ V L L L N ++ E + ++ DL+ W D RLSW+P E
Sbjct: 53 RVSVGLILAQLISLNEKDEEMSTKVYLDLE--WTDYRLSWDPAE 94
>BC011371-1|AAH11371.1| 501|Homo sapiens cholinergic receptor,
nicotinic, beta 1 (muscle) protein.
Length = 501
Score = 31.9 bits (69), Expect = 3.2
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 173 KIVVNLTL-HLTHANIRESESTVRIQADLQMNWIDKRLSWNPGE 301
++ V L L L N ++ E + ++ DL+ W D RLSW+P E
Sbjct: 53 RVSVGLILAQLISLNEKDEEMSTKVYLDLE--WTDYRLSWDPAE 94
>Y08419-1|CAA69696.1| 468|Homo sapiens nicotinic acetylcholine
receptor alpha5 subunit precursor protein.
Length = 468
Score = 30.7 bits (66), Expect = 7.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 167 DSKIVVNLTLHLTH-ANIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
+ KI + L ++ ++ E + L+ WID +L WNP ++G
Sbjct: 69 NDKIKIKFGLAISQLVDVDEKNQLMTTNVWLKQEWIDVKLRWNPDDYG 116
>U62434-1|AAB40112.1| 468|Homo sapiens nicotinic acetylcholine
receptor alpha5 subunit precursor protein.
Length = 468
Score = 30.7 bits (66), Expect = 7.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 167 DSKIVVNLTLHLTH-ANIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
+ KI + L ++ ++ E + L+ WID +L WNP ++G
Sbjct: 69 NDKIKIKFGLAISQLVDVDEKNQLMTTNVWLKQEWIDVKLRWNPDDYG 116
>M83712-1|AAA58357.1| 468|Homo sapiens nicotinic receptor alpha 5
subunit protein.
Length = 468
Score = 30.7 bits (66), Expect = 7.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 167 DSKIVVNLTLHLTH-ANIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
+ KI + L ++ ++ E + L+ WID +L WNP ++G
Sbjct: 69 NDKIKIKFGLAISQLVDVDEKNQLMTTNVWLKQEWIDVKLRWNPDDYG 116
>BC033639-1|AAH33639.1| 468|Homo sapiens cholinergic receptor,
nicotinic, alpha 5 protein.
Length = 468
Score = 30.7 bits (66), Expect = 7.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 167 DSKIVVNLTLHLTH-ANIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
+ KI + L ++ ++ E + L+ WID +L WNP ++G
Sbjct: 69 NDKIKIKFGLAISQLVDVDEKNQLMTTNVWLKQEWIDVKLRWNPDDYG 116
>AJ306481-1|CAC34820.1| 468|Homo sapiens neuronal nicotinic
acetylcholine receptor alpha-5subunit protein.
Length = 468
Score = 30.7 bits (66), Expect = 7.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 167 DSKIVVNLTLHLTH-ANIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
+ KI + L ++ ++ E + L+ WID +L WNP ++G
Sbjct: 69 NDKIKIKFGLAISQLVDVDEKNQLMTTNVWLKQEWIDVKLRWNPDDYG 116
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,658,306
Number of Sequences: 237096
Number of extensions: 1628585
Number of successful extensions: 4732
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4491
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -