Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_O06
(895 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 34 0.002
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.043
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 29 0.057
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.076
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 29 0.076
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 28 0.10
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 28 0.10
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 27 0.17
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.23
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.40
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 25 0.93
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 25 0.93
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 1.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.6
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 23 2.8
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 6.6
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 34.3 bits (75), Expect = 0.002
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +2
Query: 83 CGRMRKRNITVPHDRLAPRQRTIGTPPPDSKIVVNLTLHLTHANIRESESTVRIQADLQM 262
CGR KR + +R + ++ +TL ++ E + A L++
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQI-IDVDEKNQILTTNAWLKL 109
Query: 263 NWIDKRLSWNPGEWG 307
W+D L WN E+G
Sbjct: 110 EWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 34.3 bits (75), Expect = 0.002
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +2
Query: 83 CGRMRKRNITVPHDRLAPRQRTIGTPPPDSKIVVNLTLHLTHANIRESESTVRIQADLQM 262
CGR KR + +R + ++ +TL ++ E + A L++
Sbjct: 51 CGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQI-IDVDEKNQILTTNAWLKL 109
Query: 263 NWIDKRLSWNPGEWG 307
W+D L WN E+G
Sbjct: 110 EWVDYNLQWNESEYG 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 29.5 bits (63), Expect = 0.043
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 212 NIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
++ E + A L++ W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 29.1 bits (62), Expect = 0.057
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 173 KIVVNLTLHLTHANIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-VSSXRLXRP 349
KI + L+ L N++ T + ++ +W D +L W+P E+G L V S + RP
Sbjct: 53 KIKLKLS-QLIDVNLKNQIMTTNLW--VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRP 109
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 28.7 bits (61), Expect = 0.076
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 173 KIVVNLTL-HLTHANIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-VSSXRLXR 346
++ + L L L N++ T + ++ +W D +L W P E+G L V S + R
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 347 P 349
P
Sbjct: 113 P 113
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 28.7 bits (61), Expect = 0.076
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 173 KIVVNLTL-HLTHANIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-VSSXRLXR 346
++ + L L L N++ T + ++ +W D +L W P E+G L V S + R
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 347 P 349
P
Sbjct: 113 P 113
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 28.3 bits (60), Expect = 0.10
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +2
Query: 158 PPPDSKIVVNLTLHLTHANIRESESTVRIQADLQMNWIDKRLSWNPGEW 304
P + ++ L + H N+ E TV L++ W L+W E+
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEF 102
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 28.3 bits (60), Expect = 0.10
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +2
Query: 176 IVVNLTLHLTHA---NIRESESTVRIQADLQMNWIDKRLSWNPGEWGCXTWL-VSSXRLX 343
+VV L L L+ N+++ T + L+ W D + W+P E+G T L V S +
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 344 RP 349
P
Sbjct: 104 LP 105
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 27.5 bits (58), Expect = 0.17
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 200 LTHANIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
L N++ T + ++ W D +L WNP E+G
Sbjct: 70 LIEMNLKNQVMTTNVW--VEQRWNDYKLKWNPEEYG 103
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.23
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 143 RTIGTPPPDSKIVVNLTL-HLTHANIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
R +G + + L L L N++ T + ++ W D +L WNP ++G
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYG 90
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.2 bits (55), Expect = 0.40
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 173 KIVVNLTLHLTHA-NIRESESTVRIQADLQMNWIDKRLSWNPGEWG 307
K+ VN L N+ E ++ L+ W D +L W+ ++G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 25.0 bits (52), Expect = 0.93
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 137 RQRTIGTPPPDSKIVVNLTLHLTH-ANIRESESTVRIQADLQMNWIDKRLSWN 292
R R G D +V + L + A I + + +Q + W+D+RL +N
Sbjct: 46 RIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFN 98
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 25.0 bits (52), Expect = 0.93
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 158 PPPDSKIVVNLTLHLTHANIRESE--STVRIQADLQMNWIDKRLSWNPGEW 304
P +I N+T+ L + + S + + + + + W D LSW P ++
Sbjct: 61 PISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDF 111
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.2
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +2
Query: 176 IVVNLTLHLTHANIRESESTVRIQADLQMNWIDKRLSWNPGEW-GCXTWLVSSXRLXRP 349
+V L+LH ++ E + + W D L WN E+ G V R+ RP
Sbjct: 33 VVFGLSLHHI-IDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRP 90
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.2 bits (50), Expect = 1.6
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +2
Query: 86 GRMRKRNITVPHDRLAPRQRTIGTPPPDSKIVVNLTLHLTHANIRESESTVRIQADLQMN 265
G KR + D +R +G + LTL + ++ E + L++
Sbjct: 21 GSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLE 79
Query: 266 WIDKRLSWNPGEWGCXTWL-VSSXRLXRP 349
W D + WN ++G L + RL +P
Sbjct: 80 WNDVNMRWNVSDYGGVRDLRIPPHRLWKP 108
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 23.4 bits (48), Expect = 2.8
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2
Query: 215 IRESESTVRIQADLQMNWIDKRLSWNPGE 301
I E + T + + +W+D+RL++ G+
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGK 72
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 22.2 bits (45), Expect = 6.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -3
Query: 326 TPAKXCSPTPLGSNSVVCRSNSFED 252
TP + + PL + V CR+N E+
Sbjct: 26 TPRRKKNKKPLPTECVFCRNNGEEE 50
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,343
Number of Sequences: 438
Number of extensions: 2879
Number of successful extensions: 32
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -