Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_O01
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 201 7e-52
07_01_0578 + 4295386-4296489,4297394-4297507 199 2e-51
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.17
03_05_0366 - 23505755-23506441 31 1.2
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 31 1.2
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 31 1.2
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 2.1
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.8
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.8
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 3.8
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.6
03_06_0485 + 34242121-34243188 28 8.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 201 bits (490), Expect = 7e-52
Identities = 98/157 (62%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Frame = +2
Query: 119 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 295
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 296 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWGRWHRRVTTXX 475
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK W RWHRRV
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 476 RKAXLAXXXXATGXXALVQAXGHIIEXIPEXPLVVXD 586
R+ +A AT +LV A GH IE +PE PLVV D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSD 159
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 199 bits (486), Expect = 2e-51
Identities = 95/157 (60%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Frame = +2
Query: 128 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 301
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 302 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWGRWHRRVTTXXRK 481
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK W +WHRRV R+
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 482 AXLAXXXXATGXXALVQAXGHIIEXIPEXPLVVXDKS 592
+A AT +LV A GH IE +PE PLV+ D +
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSA 162
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 308 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 418
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 194 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 370
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 371 HRSGQGA 391
+ + + A
Sbjct: 168 NDNDEEA 174
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 458 DGANAPRASWGRTYVHHDTCYRRHP 384
DG N PR + T VH+D Y RHP
Sbjct: 429 DGVNIPRVTLLYTGVHYDILYPRHP 453
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 31.1 bits (67), Expect = 1.2
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -1
Query: 494 PPXPLSAXXW*RDGANAPRASWGRTYVH--HDTCYRRHPDRTYEYHH-HGHAEFGRQHVQ 324
PP P A D A AP A+ T +H HD Y T+++HH HGH FGR H
Sbjct: 115 PPPPAEA-----DQAAAPPAT-DATVIHMVHDYPY------THDHHHGHGHHLFGRDH-- 160
Query: 323 YPMIQH 306
+P H
Sbjct: 161 WPASHH 166
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 91 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 246
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 413 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 306
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -1
Query: 386 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 285
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = -1
Query: 452 ANAPRASWGRTYVHHDTCYRRHP--DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 285
A++P + + ++ H + P D +HHH H G H Q QH PP
Sbjct: 7 ASSPSSFFPPNFLLHMAQQQAAPPHDPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 91 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 246
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 293 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 397
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_06_0485 + 34242121-34243188
Length = 355
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -1
Query: 824 WGGXXGPXXGXXGXFXPKXXGQNQXPGXXGPGGG 723
WGG G G G G PG G GGG
Sbjct: 306 WGGGNGAGPGGNGDGATGGSGAGVAPGGGGSGGG 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,076,444
Number of Sequences: 37544
Number of extensions: 410495
Number of successful extensions: 1332
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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