Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_N24
(974 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 44 2e-06
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 42 8e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 39 8e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 37 2e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 37 2e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 37 2e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 36 4e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 36 7e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 35 0.001
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 34 0.002
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.016
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.016
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 28 0.11
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 27 0.26
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 9.7
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 44.0 bits (99), Expect = 2e-06
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +1
Query: 166 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRLLADLQ 330
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 331 MXWIXXRLSWNAGEW-GCSTWLVSSERLWXPDXVL 432
+ W L+W + E+ ++ V S +W PD V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 41.9 bits (94), Expect = 8e-06
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Frame = +1
Query: 148 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 306
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 307 VRLLADLQMXWIXXRLSWNAGEWGCSTWL-VSSERLWXPDXVL 432
+ L+ W + W+ E+G T L V SE +W PD VL
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVL 109
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 38.7 bits (86), Expect = 8e-05
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = +1
Query: 136 LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRE 294
++C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 295 SESTVRLLADLQMXWIXXRLSWNAGEWG-CSTWLVSSERLWXPDXVL 432
T + + + W +L WN ++G T V SE +W PD VL
Sbjct: 65 QIMTTNVWVEQE--WNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVL 109
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.1 bits (82), Expect = 2e-04
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = +1
Query: 193 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRLLADLQMXWIXXRLS 357
+++ LL++Y+ P + V + L+ ++ E + A L++ W+ L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 358 WNAGEW-GCSTWLVSSERLWXPDXVLL-XAXAPTAGDYXLRARLSNNGSVSXXP 513
WN E+ G ++ +LW PD ++ A G Y +++NGS P
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVP 171
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.1 bits (82), Expect = 2e-04
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = +1
Query: 193 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRLLADLQMXWIXXRLS 357
+++ LL++Y+ P + V + L+ ++ E + A L++ W+ L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 358 WNAGEW-GCSTWLVSSERLWXPDXVLL-XAXAPTAGDYXLRARLSNNGSVSXXP 513
WN E+ G ++ +LW PD ++ A G Y +++NGS P
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVP 171
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 37.1 bits (82), Expect = 2e-04
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Frame = +1
Query: 193 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRLLAD---LQMXWIXXRLS 357
+ D LL+ Y+R P LT L L+ + + E +++ ++ W +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 358 WNAGEWGCSTWL-VSSERLWXPDXVLL-XAXAPTAGDYXLRARLSNNGSVSXXP 513
WN E+G L V SE +W PD VL A +A L G VS P
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKP 150
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 36.3 bits (80), Expect = 4e-04
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 283 NIRESESTVRLLADLQMXWIXXRLSWNAGEW-GCSTWLVSSERLWXPDXVLL-XAXAPTA 456
++ E + A L++ W+ L WN E+ G ++ +LW PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 457 GDYXLRARLSNNGSVSXXP 513
G Y +++NGS P
Sbjct: 85 GTYQTSVVVTHNGSCLYVP 103
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 35.5 bits (78), Expect = 7e-04
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +1
Query: 172 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRLLADLQMXW 339
N +++S ++D+LL YD PD V + + +R I E + T + + W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 340 IXXRLSWNAGEWGCSTWLVSSERLWXPD 423
+ RL++ G+ + + R+W PD
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 34.7 bits (76), Expect = 0.001
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Frame = +1
Query: 166 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRLLAD 324
C + D LL+ Y++ P + LT+ ++ N++ T L
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 325 LQMXWIXXRLSWNAGEWGCSTWL-VSSERLWXPDXVL 432
++ W +L W+ E+G L V S+ +W PD VL
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVL 113
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 283 NIRESESTVRLLADLQMXWIXXRLSWNAGEW-GCSTWLVSSERLWXPDXVLL-XAXAPTA 456
++ E + A L++ W+ L WN E+ G ++ +LW PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 457 GDYXLRARLSNNGSVSXXP 513
G Y ++++GS P
Sbjct: 85 GTYQTSVVVTHDGSCLYVP 103
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 283 NIRESESTVRLLADLQMXWIXXRLSWNAGEW-GCSTWLVSSERLWXPDXVLL-XAXAPTA 456
++ E + A L++ W+ L WN E+ G ++ +LW PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 457 GDYXLRARLSNNGSVSXXP 513
G Y ++++GS P
Sbjct: 85 GTYQTSVVVTHDGSCLYVP 103
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 283 NIRESESTVRLLADLQMXWIXXRLSWNAGEW-GCSTWLVSSERLWXPDXVLL-XAXAPTA 456
++ E + A L++ W+ L WN E+ G ++ +LW PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 457 GDYXLRARLSNNGSVSXXP 513
G Y ++++GS P
Sbjct: 85 GTYQTSVVVTHDGSCLYVP 103
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 283 NIRESESTVRLLADLQMXWIXXRLSWNAGEW-GCSTWLVSSERLWXPDXVLL-XAXAPTA 456
++ E + A L++ W+ L WN E+ G ++ +LW PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 457 GDYXLRARLSNNGSVSXXP 513
G Y ++++GS P
Sbjct: 85 GTYQTSVVVTHDGSCLYVP 103
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 34.3 bits (75), Expect = 0.002
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 283 NIRESESTVRLLADLQMXWIXXRLSWNAGEW-GCSTWLVSSERLWXPDXVLL-XAXAPTA 456
++ E + A L++ W+ L WN E+ G ++ +LW PD ++ A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 457 GDYXLRARLSNNGSVSXXP 513
G Y ++++GS P
Sbjct: 85 GTYQTSVVVTHDGSCLYVP 103
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.1 bits (67), Expect = 0.016
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +1
Query: 193 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRLLAD---LQMXWIXXRLS 357
+ D LL+ Y++ P ++ V+ + + L+ + + + +++ ++ W +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 358 WNAGEWGCSTWL-VSSERLWXPDXVL 432
W E+G L V S+ +W PD VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.1 bits (67), Expect = 0.016
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +1
Query: 193 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRLLAD---LQMXWIXXRLS 357
+ D LL+ Y++ P ++ V+ + + L+ + + + +++ ++ W +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 358 WNAGEWGCSTWL-VSSERLWXPDXVL 432
W E+G L V S+ +W PD VL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVL 117
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 28.3 bits (60), Expect = 0.11
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Frame = +1
Query: 172 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRLLADLQMXW 339
N ++S ++DS +YD+ P+ + V +T++ L +++ E + L + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 340 IXXRLSWNAGEWGCSTWLVSSE---RLWXPD 423
RL++ G T V SE +W PD
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPD 97
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.1 bits (57), Expect = 0.26
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Frame = +1
Query: 172 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRLLADLQMXW 339
N ++S ++DS +YD+ P+ + V +T++ L +++ E L + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 340 IXXRLSWNAGEWGCSTWLVSSE---RLWXPD 423
RL++ G T V SE +W PD
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPD 97
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 9.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 390 PSAAAPFPCVPTQS 349
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,743
Number of Sequences: 438
Number of extensions: 4652
Number of successful extensions: 24
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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