Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_N17
         (1143 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.91 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   6.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 590 PPPPPXKXXDXPPPXFFXXGGGXXPPPP 673
           PPP P      PPP      G   PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +2

Query: 584 GXPPPPPXKXXDXPPPXFFXXGGGXXPPPP 673
           G PPPPP      PPP     G G  PPPP
Sbjct: 759 GGPPPPP------PPPGV--AGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
 Frame = +2

Query: 590 PPPPPXKXXDXP-------PPXFFXXGGGXXPPPPXGGGG 688
           PPPPP      P       PP     GG   PPPP G  G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
 Frame = +2

Query: 950  PPPPPP--XXXXXXXXXXTKNPXPPXXXXXXXPPAXXXXAXXXPPPXPXXXP 1099
            PPPPPP               P  P       PP     A   PPP P   P
Sbjct: 732  PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 686 PPPPXXGGXXXPPPXXKKXGGGXP 615
           PP P  GG   PPP     G G P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
 Frame = +2

Query: 590 PPPPPXKXXDXPPPXFFXXG-GGXXPPPP 673
           P PPP      PPP     G  G  PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
 Frame = -1

Query: 771 QKKKXXXGGVXPPPLXXXXXXXXXXXXXPPP-PXGGGGXXPPPXXKKXGGG 622
           Q+K        PPP              PPP P  GG   PPP     G G
Sbjct: 724 QQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 687 PPPPXGGGGXXPPP 646
           PPPP G  G  PPP
Sbjct: 764 PPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 584 GXPPPPPXKXXDXPPPXFFXXGGGXXPPPP 673
           G PPPPP      PPP F        PPPP
Sbjct: 7   GNPPPPP------PPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 599 PPXKXXDXPPPXFFXXGGGXXPPPPXG 679
           PP      PPP  F       PPPP G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +2

Query: 590 PPPPPXKXXDXPPPXFFXXGGGXXPPPP 673
           PPPPP +     PP          PPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPP 340


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 590  PPPPPXKXXDXPPPXFFXXGGGXXPPPP 673
            PPPPP      P       G    PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,809
Number of Sequences: 5004
Number of extensions: 35447
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)