Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_N14
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.1  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   5.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   8.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   8.7  

>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 472 SPLTLAHPPVAPEPPRKPFKLFRPYLLEDEDEKXSPL 582
           S LT A  PV P P  KP  L  P ++E  +   SPL
Sbjct: 297 SDLTPARTPVTPAPLEKPVNL-APEVVEPTNAAASPL 332


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 319 EEVMAPAVELSLTAPLAKQVQLVATFGSVCDGCQTS*R 206
           +E +   ++ +    +A +V +VA FG V  GC TS R
Sbjct: 197 KESLVDGIKRATDVMIAGKVAVVAGFGDVGKGCSTSLR 234


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -1

Query: 304 PAVELSLTAPLAKQVQLVATFGSVCDGCQTS*RWHVGFLYI 182
           P V +  T+ + +    V+ F ++C        WHVG L +
Sbjct: 176 PQVSVLFTSSVKRSPHGVSWFATICSETHIENEWHVGPLSV 216


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 228  SQTDPKVATS*TCFASGAVKESSTAGAITSSI 323
            S+ DP  A S T  ++ ++  +S +G+ TSS+
Sbjct: 960  SEVDPSTAASATGSSTSSIATASVSGSSTSSV 991


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,498
Number of Sequences: 5004
Number of extensions: 36148
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)