Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_N12
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    25   1.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    25   1.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    25   1.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   1.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   1.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.8  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -1

Query: 628 RTESCRSRTKRN-RRDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVXEAALY*NTN 452
           R    R R K++ + + + RK R   +    D  R  R  S+    I ++    ++ N N
Sbjct: 38  RYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNN 95

Query: 451 SLKRT*RTNIDQTRHRPHPLPV 386
           + K+    NI+     P P+PV
Sbjct: 96  NYKKLQYYNINYIEQIPVPVPV 117


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -1

Query: 628 RTESCRSRTKRN-RRDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVXEAALY*NTN 452
           R    R R K++ + + + RK R   +    D  R  R  S+    I ++    ++ N N
Sbjct: 38  RYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNN 95

Query: 451 SLKRT*RTNIDQTRHRPHPLPV 386
           + K+    NI+     P P+PV
Sbjct: 96  NYKKLQYYNINYIEQIPVPVPV 117


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -1

Query: 628 RTESCRSRTKRN-RRDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVXEAALY*NTN 452
           R    R R K++ + + + RK R   +    D  R  R  S+    I ++    ++ N N
Sbjct: 38  RYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNN 95

Query: 451 SLKRT*RTNIDQTRHRPHPLPV 386
           + K+    NI+     P P+PV
Sbjct: 96  NYKKLQYYNINYIEQIPVPVPV 117


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -1

Query: 628 RTESCRSRTKRN-RRDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVXEAALY*NTN 452
           R    R R K++ + + + RK R   +    D  R  R  S+    I ++    ++ N N
Sbjct: 271 RYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNN 328

Query: 451 SLKRT*RTNIDQTRHRPHPLPV 386
           + K+    NI+     P P+PV
Sbjct: 329 NYKKLQYYNINYIEQIPVPVPV 350


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -1

Query: 628 RTESCRSRTKRN-RRDLTARKIRGRPENAGPDPVRNVRRFSRVSY*IYTVXEAALY*NTN 452
           R    R R K++ + + + RK R   +    D  R  R  S+    I ++    ++ N N
Sbjct: 38  RYSRSREREKKSYKNENSYRKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNN 95

Query: 451 SLKRT*RTNIDQTRHRPHPLPV 386
           + K+    NI+     P P+P+
Sbjct: 96  NYKKLQYYNINYIEQIPVPVPI 117


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 84  PDLSAASSGHFGLPRRTLVFK 22
           PDL+  S G  GLP   L  +
Sbjct: 336 PDLAGTSQGSAGLPSAILAMR 356


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 153 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 70
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,084
Number of Sequences: 438
Number of extensions: 5299
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)