Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_N11
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 120 3e-28
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 92 1e-19
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 79 8e-16
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 77 3e-15
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 65 1e-11
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 59 9e-10
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 33 0.053
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 31 0.16
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 28 2.0
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 28 2.0
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 4.6
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 26 6.1
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 8.1
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 8.1
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 120 bits (289), Expect = 3e-28
Identities = 63/155 (40%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Frame = +2
Query: 155 NQKLLQEL-QKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKL 331
N+ ++EL Q SGNN+CADC WAS+NLGIF+C+RCA+IHR +G H+SKVK + L
Sbjct: 6 NETAIRELVQSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISL 65
Query: 332 DRWEDSQVQRMKEVGNITARNKYEERVPPCYRRP-NRNDPQVLIEQWIRAKYEREEFCHP 508
D W + Q+++MK GNI A N+Y P + P N + ++E++IR KYER+ F
Sbjct: 66 DEWSNDQIEKMKHWGNINA-NRYWNPNPLSHPLPTNALSDEHVMEKYIRDKYERKLFLDE 124
Query: 509 ERQSYLSGSMQGLPYETGQGGQQIPTQKIHTQ*NR 613
+ + LP T Q P T +R
Sbjct: 125 NHST--NSKPPSLPPRTKSSSQSSPMASTSTSKSR 157
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 91.9 bits (218), Expect = 1e-19
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCL-NPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHL 325
+ N +L+ L + N VCADC N P WAS+NLG+FIC+RC+ +HR +G H+S+VK +
Sbjct: 10 ESNALVLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSV 69
Query: 326 KLDRWEDSQVQRMKEVGNITARNKYEERV 412
LD W D Q + M GN A +E ++
Sbjct: 70 DLDSWTDEQTENMTRWGNERANLYWEAKL 98
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 79.0 bits (186), Expect = 8e-16
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLK 328
+ +QKLL L+ + N VC DC +P W+S GI++C+ C++ HR MG HIS V+ L+
Sbjct: 6 EESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLR 65
Query: 329 ---LDRWEDSQVQRMKEVGNITARNKYE 403
LD W +Q++ M+ GN ARN ++
Sbjct: 66 STVLDSWTYAQLRVMRVGGNENARNYFK 93
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 77.0 bits (181), Expect = 3e-15
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +2
Query: 167 LQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWED 346
L +L + N C DC P+P WAS NLGIFIC+ C+ HRG+G S V+ + +D W +
Sbjct: 5 LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSE 64
Query: 347 SQVQRMKEVGNITAR 391
QV+ M+ GN A+
Sbjct: 65 RQVKMMEVGGNSNAK 79
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 64.9 bits (151), Expect = 1e-11
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Frame = +2
Query: 167 LQELQKRS-GNNVCADCLN-PDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRW 340
+Q L+K N+VCADC + D W S N+ + +C+ C+ IHR +G HISK + L LD
Sbjct: 717 IQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLLDSL 776
Query: 341 EDSQVQRMKEVGNITARNKYEERV--PPCYRRPNRN 442
+ ++GN YE+ + P +P N
Sbjct: 777 SQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKPEHN 812
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 58.8 bits (136), Expect = 9e-10
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Frame = +2
Query: 161 KLLQELQKRSGNNVCADC-LNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDR 337
K L+E+ S + CADC +W + N + +C+ C+ IHR +G HI+K++ L LD+
Sbjct: 674 KTLKEMH--SSDQSCADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIRSLTLDK 731
Query: 338 WEDSQVQRMKEVGNITARNKYEERVPPCYRRPNRNDPQVLIEQWIRAKYEREEF 499
+ V + GN YE + + N + + Q+++ KY + F
Sbjct: 732 FNPETVDLLYATGNSFVNEIYEGGITDWKIKNFENQERRV--QFVKDKYLYKRF 783
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 33.1 bits (72), Expect = 0.053
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 624 KYHVREDKEPKGVLKLSELNVAFAPPKIGH 713
K H+++ K+PK L L+ + FAPPK+ H
Sbjct: 1911 KGHMKKSKKPKSKLALAAMAHGFAPPKVEH 1940
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 31.5 bits (68), Expect = 0.16
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGM---GAHISKVK 319
D N KLL+ ++ NVC D N + G C C + M S++K
Sbjct: 159 DKNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDYYTMCIQEGMFSQIK 218
Query: 320 HLKLDRWEDSQVQRMKEVGNITA---RNKYEE 406
+ LD +D+ V +KE+ +I N+Y+E
Sbjct: 219 CIDLDCGKDAPVLTLKELESIVGVQLTNRYKE 250
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 498 SVIPNVSHICREACRGFLMKRGKEDSRYQLRKFILSETEDTLKYHVREDKEPKGVLKLSE 677
S IP I C G++ KR ++ R F+L T + YH D KG++ ++
Sbjct: 688 SNIPAKEAIKTADCHGWMRKRSDRYGVWKSRYFVLKGTRLSY-YHSLNDASEKGLIDMTS 746
Query: 678 LNV 686
V
Sbjct: 747 HRV 749
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 27.9 bits (59), Expect = 2.0
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = +3
Query: 369 KSGT*LLGINTRNEFPLATEDLIEMTLKSSLNNGSEPNMSAKNSVIPN--VSHICREACR 542
K G L+G++ + + + E+ T + EP + +P V H +A
Sbjct: 92 KDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGDA-- 149
Query: 543 GFLMKRGKEDSRYQLRKFILSETEDTLKYHVRED 644
+L RGK S Q+ FILS+ +T ++ +D
Sbjct: 150 -WLEARGKTYSPSQIGGFILSKMRETASTYLGKD 182
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 27.9 bits (59), Expect = 2.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -3
Query: 204 HTLFPLRFCNSCNNFWLWSTI 142
H ++PL CN N+ +W+T+
Sbjct: 49 HAVYPLAACNRLTNYNVWATV 69
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 250 WDIHMHAMCEHPPWHGRSYQQSETFEAG 333
W+I H M H W S Q+E E+G
Sbjct: 89 WNIAGHFMFSHKIWEDLSLPQNELLESG 116
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 651 PKGVLKLSELNVAFAPPKIGHMNSMQLTFMKDGTTR 758
P GVL + L +F P GH+NSM + K T R
Sbjct: 601 PAGVL-IFRLQESFTYPNAGHVNSMLTSKAKTVTRR 635
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 32 RSVPQTAFVRAVRLSSGDATYASGKRACLHY*CKTSTMVDHNQKLLQELQKRS 190
R P+ V ++GD + G A +H C S + D QKL Q + +
Sbjct: 247 RFTPRDGKPPVVNGTNGDQSDYFGANAAVHGLCLLSQVPDQQQKLQQPISSEN 299
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 191 GNNVCADCLNPDPDWASYNLGIFI 262
G + +C DP SYN+GIF+
Sbjct: 226 GADTSTNCTTLDPSQWSYNIGIFM 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,657,586
Number of Sequences: 5004
Number of extensions: 78699
Number of successful extensions: 209
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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