Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_N11
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   2.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   2.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   2.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   4.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   4.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 576 RYQLRKFILSETEDTLKYHVREDKEPKGVLKL 671
           R + R+  ++    T K ++  DKE KG++++
Sbjct: 488 RLKARRACMNYERFTYKININSDKETKGMMRI 519


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 576 RYQLRKFILSETEDTLKYHVREDKEPKGVLKL 671
           R + R+  ++    T K ++  DKE KG++++
Sbjct: 488 RLKARRACMNYERFTYKININSDKETKGMMRI 519


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 479 KYEREEFCHPERQSYLSGSMQGLPY 553
           KY  + +  PER     G  +G+PY
Sbjct: 590 KYSSQPYGFPERLLLPKGKKEGMPY 614


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 371 VGNITARNKYEERVPPCYRRPNRNDPQVL 457
           +  + A N Y       YR P +N P+VL
Sbjct: 413 ISRVAAYNTYGRNAGLRYRGPKQNKPKVL 441


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 479 KYEREEFCHPERQSYLSGSMQGLPY 553
           KY  + +  PER     G  +G+PY
Sbjct: 590 KYSSQPYGFPERLLLPKGKKEGMPY 614


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 565 RRTADTNSENSYSVKPKTRSSITLERTR 648
           RRT  T  EN  S+K    + + L+ T+
Sbjct: 381 RRTGKTTEENPKSIKSGDAAIVMLQPTK 408


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 565 RRTADTNSENSYSVKPKTRSSITLERTR 648
           RRT  T  EN  S+K    + + L+ T+
Sbjct: 92  RRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 124 IMKTCTLAASVRRVATRKSNSSNERGLWHTARXRER 17
           IMKT  L     R ++ K  +  E   WHT    +R
Sbjct: 589 IMKTYWLEKREHRSSSTKGITIQEPPQWHTRSTEKR 624


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 277 EHPPWHGRSYQQSETFEAGQMGRLTGTE 360
           E PPW   SY+      AG+    T TE
Sbjct: 124 EPPPWETDSYKLIGRIAAGEGRFNTNTE 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,052
Number of Sequences: 438
Number of extensions: 5374
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)