Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_N08
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 101 1e-22
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 31 0.28
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 30 0.38
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 28 2.0
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.1
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 6.1
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 26 6.1
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 26 8.1
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 101 bits (243), Expect = 1e-22
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Frame = +2
Query: 44 HPLCEFCEKRFMDPDELYRHLRKEHLYCHLCD-ADGK--NFYYASHSALAQHFRKDHYLC 214
HP CEFC F D DEL++H R++H C++CD G+ + Y+ ++ +L +HF KDHY+C
Sbjct: 244 HPKCEFCNTHFYDDDELFKHCREKHERCYICDQVAGRPTHQYFKNYDSLERHFEKDHYIC 303
Query: 215 EEGECAGQHLAAVFRSEIDLKAHIATTHGRGMPRGAARQARTLELQFNITPHPVVTQRTP 394
E EC + VF +EIDLKAH H + R+AR + QF+ P P + R
Sbjct: 304 RERECL-ERKFVVFGTEIDLKAHQLDEHPHNFTQRELREARRIIPQFSYDP-PGASGRNR 361
Query: 395 RDR 403
R+R
Sbjct: 362 RER 364
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +2
Query: 32 HTGXHPL-CEF--CEKRFMDPDELYRHLR 109
HTG P C + C+KRF DEL RH+R
Sbjct: 26 HTGEKPFECSYPSCKKRFTRRDELIRHVR 54
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +2
Query: 32 HTGXHP-LCEF--CEKRFMDPDELYRHLR 109
HTG P +C F C KRF DEL RH R
Sbjct: 48 HTGEKPHVCTFPGCAKRFSRSDELTRHAR 76
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 53 CEFCEKRFMDPDELYRHLRKEHL 121
C FC + F D L RH+++ HL
Sbjct: 58 CSFCNRAFARSDVLNRHVQQMHL 80
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 245 LNVVRHTRPLHISSDPCGNVEQVRSVKHNRNSFH 144
L++VRHT PL+ +S + +++ S + R S H
Sbjct: 258 LDLVRHTPPLNYTSSVDSSPQRMASDSYGRPSLH 291
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 691 SLPSQPASASNFRLTQTSGNRISIPHNRRSHSXTMTNSPSLS 816
S S P+S+S+ LT +S + SIP S S T ++ S S
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSS 258
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 30 LTQGAIHFVNSVRNDSWILMSCTVTCARSTCTVICVMPMERISIMLHTPHLLN 188
LT+ F+NS+R L V C R ++ + S MLH L+N
Sbjct: 433 LTRADALFINSIREGVSNLALEYVVCQRDRYGMVLLSEFTATSAMLHDVPLIN 485
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 56 EFCEKRFMDPDELYRHLRKEHLYCH---LCDADGKNFYYASHSALAQHFRKDH 205
E C F +L RH H C+ G +++ H AL +H R H
Sbjct: 583 EICNTVFSRTYDLIRHQDTIHAKTRPVFRCEICGDQRHFSRHDALVRHLRVKH 635
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 836 DGXLSPILREGEFVIVXEWLLLLWGIEMRFPLVWVNLKLL 717
DG SP+ G F +L+L ++P WV+LKL+
Sbjct: 195 DGHFSPV---GGFSESDNKILILDVARFKYPCYWVDLKLM 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,131
Number of Sequences: 5004
Number of extensions: 66238
Number of successful extensions: 208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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