Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_N08
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 65 8e-11
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 56 5e-08
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 33 0.30
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 33 0.30
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 32 0.69
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193 30 2.1
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 29 3.7
11_06_0697 + 26371193-26371397,26371562-26374254 29 4.9
02_01_0130 - 938530-939990 29 4.9
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 6.5
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 29 6.5
08_01_0380 - 3376475-3377116,3377722-3377919,3378381-3378556,337... 28 8.5
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 28 8.5
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804... 28 8.5
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 64.9 bits (151), Expect = 8e-11
Identities = 31/92 (33%), Positives = 46/92 (50%)
Frame = +2
Query: 38 GXHPLCEFCEKRFMDPDELYRHLRKEHLYCHLCDADGKNFYYASHSALAQHFRKDHYLCE 217
G HP+CEFC+ F +ELY H+ +EH CH+C S+ QH ++
Sbjct: 142 GGHPMCEFCKSPFYGDNELYTHMTREHFSCHICQRYSARLQSLSYLVRQQH--NADFVIV 199
Query: 218 EGECAGQHLAAVFRSEIDLKAHIATTHGRGMP 313
+ +GQ+ FR+ DL+ H HG+ MP
Sbjct: 200 NRQHSGQY--DYFRNYDDLERHNGVEHGKHMP 229
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 55.6 bits (128), Expect = 5e-08
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 44 HPLCEFCEKRFMDPDELYRHLRKEHLYCHLCDAD--GKNFYYASHSALAQHFRKDH 205
HP+CEFC F +ELY H+ +EH CH+C G+ Y+ ++ L +H +H
Sbjct: 163 HPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQHPGQYDYFRNYDDLERHNAMEH 218
Score = 34.7 bits (76), Expect = 0.098
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 2/112 (1%)
Frame = +2
Query: 77 MDPDELYRHLRKEHLYCHLCDADGKNFYYASHSALAQHFRKDHYLCEEGECAGQHLAAV- 253
+D E+ R H C C + +FY + L H ++HY C C QH
Sbjct: 150 VDGSEVERSGFAGHPMCEFCRS---SFY--GDNELYTHMSREHYSCHI--CQRQHPGQYD 202
Query: 254 -FRSEIDLKAHIATTHGRGMPRGAARQARTLELQFNITPHPVVTQRTPRDRG 406
FR+ DL+ H A HG M R A + F I +R R RG
Sbjct: 203 YFRNYDDLERHNAMEHGGRMSRAQRNAALQIPTSF-IYRRNEQDERRGRGRG 253
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 33.1 bits (72), Expect = 0.30
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 53 CEFCEKRFMDPDELYRHLRKEHLYCHLC 136
C +C++ F D L +H + +H CH+C
Sbjct: 13 CYYCDREFDDEKILVQHQKAKHFKCHVC 40
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = +2
Query: 50 LCEF--CEKRFMDPDEL--YRHLRKEHLY-CHLCDADGKNFYYASHSALAQHF----RKD 202
LC + C K F+D L + H+ E Y CH D K + S L +HF +
Sbjct: 44 LCSYEGCGKTFVDAGALRKHAHVHGERQYVCHYAGCDKK---FLDSSKLKRHFLIHTGEK 100
Query: 203 HYLCEEGECAGQHLAAVFRSEIDLKAHIAT 292
+++C C G+ LA F + +LKAH+ T
Sbjct: 101 NFVCPHEGC-GKVLA--FSLDFNLKAHMKT 127
Score = 33.1 bits (72), Expect = 0.30
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Frame = +2
Query: 62 CEKRFMDPDELYRHLR----KEHLYCHLCDADGKNFYYASHSALAQHFRK----DHYLCE 217
C+K+F+D +L RH +++ C + GK ++ L H + ++++C+
Sbjct: 79 CDKKFLDSSKLKRHFLIHTGEKNFVCPH-EGCGKVLAFSLDFNLKAHMKTHSVDNYHVCK 137
Query: 218 EGECAGQHLAAVFRSEIDLKAHIATTHGRG---MPRGAA--RQARTLELQFNITPHPVVT 382
ECA + F E L+AHI H +G P G+A R + TP P
Sbjct: 138 YPECARR-----FTQESKLRAHIKQQHEKGGLQNPGGSATNRSGLADHSHNSHTPKPSAA 192
Query: 383 QRTP 394
TP
Sbjct: 193 PPTP 196
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 31.9 bits (69), Expect = 0.69
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 86 DELYRHLRKEHLYCHLCDADGKNFYYASHSALAQHFRKDHYLCE 217
D +++H K+ L DG + + S S+L +H+RK+ C+
Sbjct: 393 DSVFQHEHKKGLSAKPFGNDGNDLDFKSRSSLQEHYRKESITCK 436
>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
Length = 476
Score = 30.3 bits (65), Expect = 2.1
Identities = 22/84 (26%), Positives = 28/84 (33%)
Frame = +2
Query: 50 LCEFCEKRFMDPDELYRHLRKEHLYCHLCDADGKNFYYASHSALAQHFRKDHYLCEEGEC 229
+CE C K F L H R +L L G A + RK Y+C E C
Sbjct: 82 VCEICGKGFQRDQNLQLHRRGHNLPWKLRQRGG-----AGGGGGGEPPRKRVYVCPEASC 136
Query: 230 AGQHLAAVFRSEIDLKAHIATTHG 301
+ +K H HG
Sbjct: 137 VHHSPSRALGDLTGIKKHFCRKHG 160
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/84 (26%), Positives = 30/84 (35%)
Frame = +2
Query: 50 LCEFCEKRFMDPDELYRHLRKEHLYCHLCDADGKNFYYASHSALAQHFRKDHYLCEEGEC 229
+CE C K F L H R +L L ++ + A RK Y+C E C
Sbjct: 40 VCEVCNKGFQRDQNLQLHRRGHNLPWKLRHRAAA---VSAVTTAAPAPRKRVYVCPEPTC 96
Query: 230 AGQHLAAVFRSEIDLKAHIATTHG 301
A +K H + HG
Sbjct: 97 VHHDPARALGDLTGIKKHFSRKHG 120
>11_06_0697 + 26371193-26371397,26371562-26374254
Length = 965
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 74 FMDPDELYRHLRKEHLYCHLCDADGKNFYY--ASHSALAQHFRKDH 205
++ DEL RHL++ LYC + D N Y+ + +A+ F +DH
Sbjct: 361 YLSYDELPRHLKQCFLYCSVYPEDA-NIYHDDLTRMWIAEGFIEDH 405
>02_01_0130 - 938530-939990
Length = 486
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 468 TATKTSHASAPRRPPKTSCWAPRSGTLPVEID*RAMTRT 584
T + H P R +T CWA R +P+ D R + T
Sbjct: 194 TIRELGHMGLPERALQTLCWAQRQTVVPLFPDDRILAST 232
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/84 (26%), Positives = 27/84 (32%)
Frame = +2
Query: 50 LCEFCEKRFMDPDELYRHLRKEHLYCHLCDADGKNFYYASHSALAQHFRKDHYLCEEGEC 229
+CE C K F L H R +L L GK RK Y+C E C
Sbjct: 49 VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSGK------------EVRKRVYVCPEPTC 96
Query: 230 AGQHLAAVFRSEIDLKAHIATTHG 301
+ +K H HG
Sbjct: 97 VHHDPSRALGDLTGIKKHFCRKHG 120
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 453 RDWTPTATKTSHASAPRRPPKTSCWAPRSGTLP 551
+D P +SHASA + S W + GTLP
Sbjct: 263 QDPIPQVKNSSHASADNHETQESDWFQQDGTLP 295
>08_01_0380 -
3376475-3377116,3377722-3377919,3378381-3378556,
3378681-3379703,3380476-3380593
Length = 718
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
Frame = -1
Query: 236 VRHTRPLHIS---SDPCGNV 186
V HTRPLHIS SDPC ++
Sbjct: 209 VSHTRPLHISTAGSDPCDSM 228
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 28.3 bits (60), Expect = 8.5
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Frame = +2
Query: 50 LCEF--CEKRFMDPDELYRHLRKEHLYCHLCDADGKNFYYASHSALAQHF-----RKDHY 208
LC + C K F+D L +H + ++C G + S L +H +KD +
Sbjct: 88 LCSYENCGKTFVDVAALRKHAHVHNERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKD-F 146
Query: 209 LCEEGECAGQHLAAVFRSEIDLKAH-IATTHGRGMPRGAARQARTLELQFNITPH----- 370
+C C G+ + F LK H + H P R +L+ ++ H
Sbjct: 147 ICPHPGC-GKAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKGHEKTGT 205
Query: 371 PVVTQRTP 394
P+ Q P
Sbjct: 206 PITAQYVP 213
>01_06_1078 +
34378985-34380064,34380155-34380283,34380362-34380430,
34380536-34380588,34381309-34381421,34381565-34382132,
34382520-34382580,34382624-34382665
Length = 704
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 50 LCEFCEKRFMDPDELYRHLRKEHL 121
+C CE+ F+D + HL EHL
Sbjct: 100 VCPNCERMFLDSEGFLLHLENEHL 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,846,576
Number of Sequences: 37544
Number of extensions: 527571
Number of successful extensions: 1710
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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