Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_N06
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.096
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.51
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.3
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.096
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 549 PPPXXXXFPPPXRXXPPXAXXXGAPPPP 466
PPP PPP P A APPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.51
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 549 PPPXXXXFPPPXRXXPPXAXXXGAPPPP 466
PPP PP PP G PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 178 PIXXGPXXXKXPPPPXXKXGGXPPPP 255
PI GP PPPP G PPPP
Sbjct: 756 PIMGGPPP--PPPPPGVAGAGPPPPP 779
Score = 29.1 bits (62), Expect = 0.89
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 213 PPPXXXKXGXPPPPXPKXFXXPXPP 287
PPP G PPPP P PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 191 APXKXKXPPPXXXKXGXPPPP 253
AP PPP G PPPP
Sbjct: 745 APAPIPVPPPAPIMGGPPPPP 765
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 213 PPPXXXKXGXPPPPXP 260
PPP G PPPP P
Sbjct: 766 PPPGVAGAGPPPPPPP 781
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 133 PPXXXTXXGGKXEKPPIXXGPXXXKXPPPPXXKXGGXPPPPXQK 264
PP G PP+ P PPP + G PPP K
Sbjct: 300 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPFK 343
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 133 PPXXXTXXGGKXEKPPIXXGPXXXKXPPPPXXKXGGXPPPP 255
PP G PP+ P PPP + G PPP
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 249
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 133 PPXXXTXXGGKXEKPPIXXGPXXXKXPPPPXXKXGGXPPPP 255
PP G PP+ P PPP + G PPP
Sbjct: 222 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 262
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 133 PPXXXTXXGGKXEKPPIXXGPXXXKXPPPPXXKXGGXPPPP 255
PP G PP+ P PPP + G PPP
Sbjct: 235 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 275
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 133 PPXXXTXXGGKXEKPPIXXGPXXXKXPPPPXXKXGGXPPPP 255
PP G PP+ P PPP + G PPP
Sbjct: 248 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 133 PPXXXTXXGGKXEKPPIXXGPXXXKXPPPPXXKXGGXPPPP 255
PP G PP+ P PPP + G PPP
Sbjct: 261 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 301
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 133 PPXXXTXXGGKXEKPPIXXGPXXXKXPPPPXXKXGGXPPPP 255
PP G PP+ P PPP + G PPP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 133 PPXXXTXXGGKXEKPPIXXGPXXXKXPPPPXXKXGGXPPPP 255
PP G PP+ P PPP + G PPP
Sbjct: 287 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/46 (28%), Positives = 14/46 (30%)
Frame = -2
Query: 590 PPAXXPAXXXXXXSXRXARXXFPXPXGXXPXXXPXXXRPPPPXXXG 453
PP P+ A P P G P P PP P G
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG 1157
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/43 (27%), Positives = 13/43 (30%)
Frame = -2
Query: 593 PPPAXXPAXXXXXXSXRXARXXFPXPXGXXPXXXPXXXRPPPP 465
PPP P+ P P G P P PP P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -2
Query: 890 PXPPPXXPXPXXPXXAHPPLXXPXXSXRXXXPXXPSXXPXA 768
P PPP P P A PPL + P PS P A
Sbjct: 389 PAPPPAIPGRSAP--ALPPLGNASRTSTPPVPTPPSLPPSA 427
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.150 0.517
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,752,874
Number of Sequences: 5004
Number of extensions: 25088
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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