Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_N01
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0452 + 23044190-23045227 35 0.073
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 32 0.52
06_03_1310 + 29238644-29240260 32 0.68
07_01_0373 + 2783596-2784933 31 0.90
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.6
01_01_0046 - 331758-332627 29 4.8
04_01_0041 - 464695-464850,467485-469029 29 6.4
01_05_0227 - 19512866-19514983 29 6.4
10_01_0274 - 2901033-2901778,2902475-2902634 28 8.4
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.4
>02_04_0452 + 23044190-23045227
Length = 345
Score = 35.1 bits (77), Expect = 0.073
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +3
Query: 480 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPPDLTSISINPLNAVLXGVR 659
H +L H+ +A SH SR H P + P S PPP + S A G
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPPPPAAASSATTAPATTTGAA 225
Query: 660 A 662
A
Sbjct: 226 A 226
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 32.3 bits (70), Expect = 0.52
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 545 AISATSTRSSNPRFHTPTTPRLNIHFHQS 631
A S+T+TR S PR H PTTP ++ +S
Sbjct: 2 AASSTATRLSPPRLHAPTTPSPHLPLRRS 30
>06_03_1310 + 29238644-29240260
Length = 538
Score = 31.9 bits (69), Expect = 0.68
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 574 KSPIPYTNHPQT*HPFPSIP*TPYXKEFAPGLKPPL*SXAPSAYLTPS-SLGMAKGGSPP 750
+SP+P+ P+ P P P +P P PP S +P + + PS S + G SPP
Sbjct: 382 RSPLPHHMPPRRTPPTPPPPSSPTPSHLPP--PPPTYSESPKSSMPPSTSPPSSHGASPP 439
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.90
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -2
Query: 92 EEEKALTKEGMAEAAETXKGTISSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>01_01_0046 - 331758-332627
Length = 289
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 519 PYASSHPPL---RSRLHQ--PDHQIPDSIHQPPPDLTSISINPLNAVL 647
P A + PPL RLHQ P D H+PPP + + P + VL
Sbjct: 53 PAARAAPPLGPTNRRLHQQPPPPASRDGRHEPPPKPKDVVVIPTDTVL 100
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Frame = +1
Query: 541 PCDLGYINPIIKSPIPYTNHPQT*HPFPSI-P*TPYXKEFAPGLKPPL*SXAPSAYLTPS 717
P D GY P + P P T P+ P P P TP AP P A P
Sbjct: 207 PADPGYGQPAPECPPPPTPAPECGQPAPEYPPSTPAYGTPAPECPPSTPEYGTPATACPP 266
Query: 718 SLGMAKGGSPPYF 756
G P++
Sbjct: 267 PTAPGYGSPSPFW 279
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,083,683
Number of Sequences: 37544
Number of extensions: 508238
Number of successful extensions: 1551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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