Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_M22
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 28 1.4
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 1.4
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 1.4
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 27 2.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.3
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 27 4.3
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 5.7
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 7.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 10.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 10.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 10.0
>SPCC23B6.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 139
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 108 KRNQKARSGKSLDLLARESRKRRRESGLQTKLTEAV 1
K+N+K S K+ D LA + + RE L TK+++++
Sbjct: 62 KKNKKQTSKKAKDKLAAALKAQAREERLDTKISKSL 97
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 137 RPQNRRSARTSLSDNAFPRFLLVITPP 217
RPQ +RS+ LS +AF +F+ +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.4
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 595 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSXPSLKIPVTVDLCWTTA 765
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 766 DVTVEGVNVLATPSSS 813
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 182 HCLTKKFGH--FSYFEGEFLFLGTFTAKEIKKRAL 84
+ L GH S+ GE F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 577 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 690
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 328 DLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTD 429
D+F + +P++ ++A IPSL A SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 126 PWNIHGKRNQKARSGKSLDLLARESRKRRRE 34
PW + K K R GK+++ L R R +E
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKE 316
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +1
Query: 658 IKGYRDAYLVNLEAVVFPSXPSLKIPVTVD 747
+K RD YL NLEA FPS +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +1
Query: 595 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSXPSLKIPVTVDLCWTTADVT 774
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 775 VEGVNVLATP 804
V +TP
Sbjct: 540 YTSTPVTSTP 549
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 10.0
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Frame = +1
Query: 304 VFCNWISDDLFMEE-----------IVPLVVSAASAIPSLVNA-FSSSKPPQTDNPSARS 447
V+C+ SD L EE +P A A S NA FSSS PPQ N S S
Sbjct: 1573 VYCSRCSDSLLGEESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 10.0
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Frame = +1
Query: 304 VFCNWISDDLFMEE-----------IVPLVVSAASAIPSLVNA-FSSSKPPQTDNPSARS 447
V+C+ SD L EE +P A A S NA FSSS PPQ N S S
Sbjct: 1573 VYCSRCSDSLLGEESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMS 1632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,886
Number of Sequences: 5004
Number of extensions: 62925
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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