Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_M22
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0373 + 2783596-2784933                                           32   0.49 
05_05_0175 + 22966151-22967614                                         31   1.1  
09_02_0439 + 9406451-9407178,9407225-9407603,9407887-9408038,940...    29   6.0  
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196...    28   7.9  
06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422     28   7.9  
04_01_0041 - 464695-464850,467485-469029                               28   7.9  
01_05_0227 - 19512866-19514983                                         28   7.9  

>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 12/28 (42%), Positives = 22/28 (78%)
 Frame = -1

Query: 410 EEEKALTKEGMAEAAETTKGTISSMNRS 327
           E+++ LTK G +  +ET+KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -3

Query: 339 HE*VIRNPVAKHPLQKDRKRGGRNECELIN--VGGRSYPEEHKGGVITRRNRGKALSDKE 166
           HE V   P A+  L   R  GG    E++   VGG  Y  E +GG   ++ R + +SD  
Sbjct: 5   HERVAPPPAAE--LAGRRGGGGGEGMEIVTARVGGCGYGYEEEGGTRRQQRRRRKVSDGH 62

Query: 165 VRALLL 148
           V A LL
Sbjct: 63  VVAQLL 68


>09_02_0439 +
           9406451-9407178,9407225-9407603,9407887-9408038,
           9408432-9408504,9409255-9409275
          Length = 450

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 467 GKGCISMERADGLSV*GGLEEEKALTKEGMAEAAETTKGTISSMNRSSEIQLQNTLYRR 291
           G+G +    A G+   GG+ +  AL   G+   A TT+    S   S+EI   N +YR+
Sbjct: 388 GRGVVGAGGAGGVG--GGVLDGSALGAGGVCMVASTTRYKSFSPVGSNEIDGSNCMYRQ 444


>09_02_0602 -
           11118788-11119178,11119262-11119451,11119590-11119658,
           11119890-11120016,11120134-11120399,11120760-11120872,
           11121693-11121764,11121860-11121998,11124277-11124360,
           11125278-11125771,11127604-11128187
          Length = 842

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 313 NWISDDLFMEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMD 453
           +WIS +   +  + L  + +S +P +VNAF        DNPS    D
Sbjct: 313 DWISAETSGKYNITLAATDSSQLPPIVNAFEVYGRIPLDNPSTFPTD 359


>06_03_0372 - 20013078-20013533,20013969-20014062,20014247-20014422
          Length = 241

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 460 VAYPWNAQTGYQFEGVWKKRKH*PRREWPKRQKRLKAQFLP*IGHQKSSCKTPS 299
           +A P+  QTG + E   K+ K+ P++   +R K     +L   GH +   + PS
Sbjct: 105 IATPYRPQTGGKVETYNKQIKNIPQKAVNERGKHGSISYLMLFGHVEPHTRRPS 158


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 562 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-XPSLKIPV 738
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 739 TVD 747
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 779 STVTSAVVQQRSTVTGILRLGXEGKTTASRL 687
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,544,399
Number of Sequences: 37544
Number of extensions: 446917
Number of successful extensions: 1211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)