Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_M18
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   245   6e-66
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   243   3e-65
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    44   2e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.6  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   6.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  245 bits (600), Expect = 6e-66
 Identities = 118/184 (64%), Positives = 139/184 (75%)
 Frame = +1

Query: 97  EEDVXKMLAATTHLGAENVNFQMETYVYXRRADGTHVIXLRRTXEKLVLAARAVVAIENP 276
           ++D+  +LAA +H+G++N+  +ME YV+ RR+DG H+I L +T EKLVLAAR +  IENP
Sbjct: 15  DDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENP 74

Query: 277 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAXREPRLLIVLDPAQDH 456
           ADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I    REPRL+IV DP  D 
Sbjct: 75  ADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADA 134

Query: 457 QPITEASYVNIPVIALCXTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLXLRGVLPR 636
           Q I EAS+VNIPVIALC TDS L  VD+AIP N K   SIGL W+LLAREVL LRG + R
Sbjct: 135 QAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISR 194

Query: 637 DQRW 648
              W
Sbjct: 195 TTAW 198


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  243 bits (594), Expect = 3e-65
 Identities = 115/193 (59%), Positives = 142/193 (73%)
 Frame = +1

Query: 70  GGXDVXALXEEDVXKMLAATTHLGAENVNFQMETYVYXRRADGTHVIXLRRTXEKLVLAA 249
           G  ++    +ED+ ++LAA  H+G++N+  +M+ YV+ RR+DG H++ L +T EKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 250 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAXREPRLL 429
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I    REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 430 IVLDPAQDHQPITEASYVNIPVIALCXTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 609
           +V DP  D Q I EAS+VNIPVIALC TDS L  VDIAIP N K   SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184

Query: 610 LXLRGVLPRDQRW 648
           L +RG L R   W
Sbjct: 185 LRVRGTLSRSAPW 197


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 27/190 (14%)
 Frame = +1

Query: 115 MLAATTHLGAENV--NFQMETYVYXRRADGTHVIXLRRTXEKLVLAARAVVAIENPADVF 288
           +L++  HLG      N   + ++Y +R +G H+I L +T   L  A   V +I     + 
Sbjct: 53  LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111

Query: 289 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTNQ--------------------IQA 405
           +      GQ+ +V+  A       I  R+ PG  TN                     IQ 
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171

Query: 406 AXRE----PRLLIVLDPAQDHQPITEASYVNIPVIALCXTDSPLRFVDIAIPCNTKSSHS 573
             +     P L+++L+P ++     EA   ++P I +  TD+  R V   IP N  S   
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231

Query: 574 IGLMWWLLAR 603
             L+  LL+R
Sbjct: 232 TDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 466 TEASYVNIPVIALCXTDSPLRFVDIAIPCNTKSSHSI 576
           T A    +  + LC  +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = -3

Query: 468 SNGLMVLCRVQYNQETRFTXCSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 289
           S GL  L R +   E  F       +S + W  T +   + G+RG   ++   EGP   D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225

Query: 288 EHISGVLDG 262
            H SGV  G
Sbjct: 226 LH-SGVFGG 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,758
Number of Sequences: 5004
Number of extensions: 60257
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)