Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_M17
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    27   2.7  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   8.1  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   8.1  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   8.1  

>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 157 CRGFWIYCPSGWTVGGSRSMWARLRLLSTVRSVSESSPRNSISE 288
           C  F  Y  + W +    ++   L  +ST++SVSES P  +  E
Sbjct: 253 CSIFQKYLMNNWHLRSISTLEVLLNTVSTIQSVSESCPEVNFYE 296


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 356 HAQ*AVNVTPEKPDLRLKLDIHTSEIEFLGD 264
           H   A  + P + +    LDIH   +EFLGD
Sbjct: 149 HISRAYEIYPNQSNPNELLDIHNERLEFLGD 179


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 168 LDLLPQWLDRWRIAVNVGKTAALIHGPVRI 257
           L L+ +  DRW +A + GKT   + GP+RI
Sbjct: 72  LSLVQRMFDRWIVAHSNGKT---LSGPLRI 98


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 496  LRPGTTYCRRPSEPGYRPSRIFPSVIS 576
            L P  T  RR +EP Y P    PSV++
Sbjct: 1587 LNPPLTVVRRLNEPPYVPDDYLPSVMT 1613


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 423 VSGLPTRTKLA-IYKTYVRYRLTYAAAAWYHLLSPSQRARLQA 548
           VS L TR+++  I+K Y       +   + H LS SQ+ARL +
Sbjct: 359 VSLLKTRSEIVDIFKEYTSGSDKMSLEQFRHFLSTSQKARLDS 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,815
Number of Sequences: 5004
Number of extensions: 64825
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)