Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_M15
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.16
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.84
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.5
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 1.9
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 26 5.9
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.8
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 7.8
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 26 7.8
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.16
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +1
Query: 592 PYASSHPPLRSRLHQPDHQIPDSIHQPXPDLTSISINPLTPY*KEFAPGVKPPLSSEAPS 771
P +S PP+ S+ +P P + S L P V PP S+AP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPV 211
Query: 772 AYLT--PSSLGMAKGVSPXISSE 834
A + PSS G +P ++SE
Sbjct: 212 ANTSSRPSSFAPPAGHAPNVTSE 234
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.84
Identities = 25/111 (22%), Positives = 41/111 (36%)
Frame = +2
Query: 350 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 529
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 530 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNXPQT 682
V +TP ++ ++ + +T Y I S P T+ P T
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 587
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Frame = +2
Query: 362 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 535
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 536 GVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNXPQT 682
V +TP ++ ++ + +T Y I S P T+ P T
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY---TISSSTPVTSTPVT 528
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 350 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 520
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 521 DVTVEGVNVLATPSSS 568
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 612 SPAISATSTRSSNPRFHTPTXPRLNIHFHQSPDAVLKGVRAGGKASVVIRGSISVSHPLV 791
S IS +ST N FH PT + A KGV + S+ + + SV+
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAY 860
Query: 792 T 794
T
Sbjct: 861 T 861
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.9 bits (59), Expect = 1.9
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = +1
Query: 553 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPXPDLTSISINPLTPY*KEFA 732
HPF+ ++ P+A+ P L + DH + P + + S+NP TP +
Sbjct: 233 HPFMQES---KTSPFATRRPSLNT-----DHHGRPILLSPL-NYQNSSLNPSTPSPFGGS 283
Query: 733 PGVKPPLSSEAPSAYLTPSS 792
P + PP+S+ +P P S
Sbjct: 284 PVMHPPVSNLSPRTPAVPMS 303
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 597 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 478
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 332 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 445
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 413 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 502
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 836 HSLEIXGETPLAMPSDEGVRYADGAS 759
H +++ G TP +MPS+ Y +GA+
Sbjct: 850 HMVDVGGITPGSMPSNSKAIYEEGAA 875
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 593 LMHQATLPCDLGYINPIIKSPIPYTNXP 676
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 582 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 448
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 745 PPLSSEAPSAYLTPSSLGMAKGVSPXISS 831
PP++++ P +L P+S AK V P S+
Sbjct: 723 PPIATKKPPTFLKPNSPEYAKTVIPKSST 751
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 28 PPLFRSFCRGCFATGFLDDLFMEEIVPLXRFCRFGHSL 141
P +F +F L+ LF+ + P RFC +G+ L
Sbjct: 245 PVVFGAFPSLHAGWAMLEALFLSHVFPRYRFCFYGYVL 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,969
Number of Sequences: 5004
Number of extensions: 67815
Number of successful extensions: 254
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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