Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_M12
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 1.6
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 29 3.8
09_02_0226 - 6007656-6008063,6012166-6012678 29 5.0
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 6.6
08_02_0813 + 21459776-21461128 28 8.7
06_03_0743 + 24069752-24070483,24071890-24072345 28 8.7
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.7
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.7
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 396 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 548
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +3
Query: 102 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 281
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 282 LDRQTAELERRGSGAAALGW 341
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 364 PPQAFR-GHQPSAAAPLPLRSNSAVCRSNS 278
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 379 QYHVRPPQAFRGHQPSAAAPLPLRSNSAVCRSN 281
QY R P++ RG QP+A LP +A CR+N
Sbjct: 180 QYR-RGPESLRGTQPAAMLRLPCFCCAAGCRNN 211
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 427 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSNSAVCRSNS 278
T + S GGCS + PP AFRG+ + P+ + CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 311 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 490
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 491 QL 496
+L
Sbjct: 289 EL 290
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 379 QYHVRPPQAFRGHQPSAAAPLPLRSNSAVCRSN 281
QY + P++ RG QP+A LP +A CR+N
Sbjct: 253 QYR-KGPESLRGTQPTAMLRLPCYCCAAGCRNN 284
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 75 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 215
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 308 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 487
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 488 MQLDN 502
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,024,464
Number of Sequences: 37544
Number of extensions: 503825
Number of successful extensions: 1572
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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