Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_M09
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.28 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.37 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    28   2.0  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.4  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = -3

Query: 846 PPCPTGXXPXXX-----QKIEMNPETPAXGGLVAGGKAPXESRXRSTPXNTAPAA 697
           PP PTG           Q+ E  P  PA GGL AGG        +S+     P+A
Sbjct: 73  PPVPTGAPSLPTSSNNTQQAEERPSMPALGGLFAGGMPKLRHIGKSSASAAPPSA 127


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 205 VRVHRANTGRSSNELDRQTTELERR 279
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
 Frame = +2

Query: 29  IPLPFLLTCAIASAAECENATSLSLMIDSLLAT--YDRDSPPDSKIVVNLTLHLRHANIR 202
           +PL  +L  +I S+A+  + +SLS  I + ++   +D  S  DS + ++L   +  +  R
Sbjct: 247 VPLAAVLPSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPF-IPESTTR 305

Query: 203 ESE---STVRIQADLQMNWIDKRLSW 271
           E     S +R+ +     +  K LSW
Sbjct: 306 EDNQPFSEIRLLSPASEVFNAKTLSW 331


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 129 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNGII 25
           Y    ES + D+ +  SH+ A +I Q  R+G  ++
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKRLL 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,647
Number of Sequences: 5004
Number of extensions: 64067
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)