Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_M08
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 37 0.004
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 32 0.095
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 32 0.095
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 28 1.6
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.7
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 27 4.7
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 8.3
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 26 8.3
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 8.3
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 36.7 bits (81), Expect = 0.004
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 391 NIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEK 570
N+I F EL + C + + AE A +GP+ + LA KY + I+ E++EK
Sbjct: 39 NLILFPELITSGYE-CGNT---FTQIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94
Query: 571 HSDILWEHC 597
S+I++ C
Sbjct: 95 QSNIIYNSC 103
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 32.3 bits (70), Expect = 0.095
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 475 SAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWEHCGLS 606
SAE+ + + + +++VS++LE DEKH D++ GLS
Sbjct: 979 SAENTTSFSIFAAQGLTDFLIVVSNLLEMDEKHVDVVLGKLGLS 1022
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 32.3 bits (70), Expect = 0.095
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -3
Query: 503 KVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 324
++ V S ++A SH CF QN+ + + + +P T F+ LLK AFF
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289
Query: 323 LTGR 312
L GR
Sbjct: 290 LFGR 293
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 285 NYSYLHNSRRSGLLVLGRESVC---GDVEVSLLSCSDRGF 175
++S N++R+G L +G ++VC GD + LSC G+
Sbjct: 885 DFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHRLSCDSVGY 924
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 4.7
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -2
Query: 456 RLLLPCAEREGHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYS 277
R LL C +R P +L DV ++DD + F+ T GH++ + N S
Sbjct: 119 RALLSCCKRSKD-PSILFPTDVPC----SLDDDVSFL----------TFKGHKNHLENRS 163
Query: 276 YLHNSRRSGLLVLGRESVCGDVEVSLLSCSDRGFFQFDFKVIPPPKMNSVELFQVA 109
+ H+S V+ E + L DR K++ P N ++L +V+
Sbjct: 164 FFHDSESDNFKVVLSNCAINSKEDNNLVTEDR--VNLGAKLLLVPVQNLIKLLKVS 217
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 501 LPSGTRHQVRNGDRVLDIRKGREAFGHTLGT 593
LPS R+ V+N + V+ + G+ G LGT
Sbjct: 509 LPSDLRYFVKNVENVVSLNPGKATKGINLGT 539
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 94 NNLTGRDLEEFNRIHFGRRNNLEI 165
NN+ R +EE N I G+R LE+
Sbjct: 8 NNILKRHIEEDNNIDNGKRKKLEL 31
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +3
Query: 606 ISDTGNVIGKHRKNHIPRVGDF---NESNYYMEGNTAS 710
+ D G +GKHRKN + R G F ES + G T S
Sbjct: 90 LKDEGK-LGKHRKNRLRRPGRFPVRQESTIDIPGLTVS 126
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 64 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 174
E H +E +I + N+T DL F + FG+ N ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,087
Number of Sequences: 5004
Number of extensions: 64143
Number of successful extensions: 223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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