Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_M08
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 150 1e-36
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 32 0.53
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523... 32 0.70
07_01_0287 - 2094333-2094542,2094719-2095999 29 3.8
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 5.0
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 5.0
11_06_0376 + 22896481-22896972 29 6.6
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 150 bits (364), Expect = 1e-36
Identities = 85/180 (47%), Positives = 109/180 (60%), Gaps = 8/180 (4%)
Frame = +1
Query: 73 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 243
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 244 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 408
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 409 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 588
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Score = 68.9 bits (161), Expect = 5e-12
Identities = 30/43 (69%), Positives = 33/43 (76%)
Frame = +3
Query: 576 GHTLGTLRVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNT 704
G + VVI + GN+IG HRKNHIPRVGDFNES YYMEGNT
Sbjct: 201 GEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNT 243
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 32.3 bits (70), Expect = 0.53
Identities = 19/68 (27%), Positives = 37/68 (54%)
Frame = +1
Query: 355 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 534
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 535 VIVSSILE 558
VI S E
Sbjct: 91 VIPVSFFE 98
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 603 VISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNT 704
+I G +G +RK+HIP + E Y+ G+T
Sbjct: 110 IIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDT 143
>04_03_0387 -
15251816-15251905,15251999-15252069,15252098-15252323,
15252344-15252496,15252570-15252656,15252745-15252948,
15253038-15253159,15253354-15253507,15254329-15254434,
15254507-15254617,15256468-15256622
Length = 492
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 516 RHQVRNGDRVLDIRKGREAFGHTLGTLRVVISDTGNVIGKHR--KNHIPRVGDF 671
RH VR D L +R+ FG T+G+ + V D + HR H+ + DF
Sbjct: 34 RHLVRLTDAQLALRQDASTFGETIGSAQDVKFDAKTLTQAHRYVLRHLDEIEDF 87
>07_01_0287 - 2094333-2094542,2094719-2095999
Length = 496
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/74 (32%), Positives = 31/74 (41%)
Frame = -1
Query: 667 SPTLGMWFLRCFPITFPVSLMTTRSVPKVCPNASRPFLISRTRSPLRT*WRVPEGRSWSA 488
SP LG+ + F L+ S P C ASR +L+ R SPL W+
Sbjct: 265 SPFLGLPYATAFDSPLDRELVGPSSAPPPCSAASRAWLV-RCSSPL-------SDSEWTR 316
Query: 487 RLQLIRQTRTTAAS 446
R L R+ T AS
Sbjct: 317 RSILAREAAHTPAS 330
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 488 PSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSW 378
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 461 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 330
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>11_06_0376 + 22896481-22896972
Length = 163
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = +1
Query: 403 FQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDI 582
F +L + F R K W F E A E + + +R E++ +
Sbjct: 54 FDDLLALQRGFVERRKASWARFCEMA-----ARVRAEFEANGFVEVDDGYFDRQEENRAL 108
Query: 583 LWEHCG 600
+WE+CG
Sbjct: 109 VWENCG 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,247,757
Number of Sequences: 37544
Number of extensions: 446694
Number of successful extensions: 1326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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