Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_M08
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   143   2e-34
Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  143 bits (346), Expect = 2e-34
 Identities = 77/173 (44%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
 Frame = +1

Query: 76  LESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXF--PAKDEQ 249
           +E+ +   L G  L+E  RI +GR       L+ SSI              +   A+ EQ
Sbjct: 11  VETALAEKLDGVSLDEVERILYGRPYRA---LEISSIAEKLAQDGDFQLSGYIVDAQKEQ 67

Query: 250 TRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPF 429
           TR PR+V+V  IQ+ I  PT   V EQ+ AI  +V  +I+ A   G N+I  QE W MPF
Sbjct: 68  TRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPF 127

Query: 430 AFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 588
           AFCTRE+ PW EFAES   GPTT FL +LA+K+ +VI+S ILERDE+  D++W
Sbjct: 128 AFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIW 180



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = +3

Query: 600 VVISDTGNVIGKHRKNHIPRVGDFNESNYYME 695
           VVIS TG VIG+ RKNHIPRVGDFNES YYME
Sbjct: 184 VVISHTGRVIGRSRKNHIPRVGDFNESTYYME 215


>Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical
           protein T20F10.1 protein.
          Length = 908

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = +3

Query: 498 DLPSGTRHQVRNGDRVLDIRKGREAFGHTLGTLRVVISDTGNVIGKHRKNHIPRVGDFNE 677
           D P GT+H+++N    LD           L  ++ +I D  + +G H K+   R      
Sbjct: 744 DTPGGTQHRIKNWRNFLDFTYCGNLSKECLMMIQQLICDASSRLGSHGKDVAERTAQVKN 803

Query: 678 SNYY 689
             ++
Sbjct: 804 HPWF 807


>AF038612-1|AAB92043.1|  348|Caenorhabditis elegans Hypothetical
           protein F13B6.1 protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -3

Query: 689 VVVGFVKIADSRNVVLAMLPDHVSGVTN-DNPQCSQSMSECFSSLSNIEDTITIAYLMAS 513
           V+ GFV + DS+++V     D + G+TN D  +    M    S+ ++I+  IT A     
Sbjct: 156 VLNGFVGLPDSKDMVQFFDSDSIEGLTNYDQLELPMDMFHFTSNSADIKYEITYA----- 210

Query: 512 SRRKVVVGPS 483
           +R+ + +G S
Sbjct: 211 ARKGITIGSS 220


>Z73098-4|CAD44145.1|  565|Caenorhabditis elegans Hypothetical
           protein T21C9.3b protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 334 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 468
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z73098-3|CAD44144.1|  501|Caenorhabditis elegans Hypothetical
           protein T21C9.3a protein.
          Length = 501

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 334 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 468
           K +F+  ++  D   +  +NI+ F E   MP   FC   +Q W  F
Sbjct: 46  KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90


>Z67880-1|CAA91794.1|  256|Caenorhabditis elegans Hypothetical
           protein C34E7.3 protein.
          Length = 256

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -3

Query: 512 SRRKVVVGPSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSWPATS 366
           SR K+    +S+   +  HG + +V+ AK  F + +++  +TPS P T+
Sbjct: 197 SRMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,680,243
Number of Sequences: 27780
Number of extensions: 367667
Number of successful extensions: 1119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)