Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_M07
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 224 6e-59
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 41 0.001
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 35 0.099
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 32 0.53
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 31 1.2
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 31 1.6
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.9
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.9
01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255 28 8.6
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 224 bits (548), Expect = 6e-59
Identities = 125/259 (48%), Positives = 154/259 (59%), Gaps = 8/259 (3%)
Frame = +1
Query: 73 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 243
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 244 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 408
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 409 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 588
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 589 NTAVVISDTGNVIGEASQEPHSESRRX*RIPLLHGRYXGHPVFATXYGKIAVNICFGRXX 768
NTAVVI + GN+IG + GHPVF T YGKI VNIC+GR
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHH 265
Query: 769 VLNWMMFGXNGPEIVFNPS 825
LNW+ FG NG EIVFNPS
Sbjct: 266 PLNWLAFGLNGAEIVFNPS 284
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 41.1 bits (92), Expect = 0.001
Identities = 36/157 (22%), Positives = 68/157 (43%)
Frame = +1
Query: 355 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 534
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 535 VIVSSILERDEKHSDILWNTAVVISDTGNVIGEASQEPHSESRRX*RIPLLHGRYXGHPV 714
VI S E+ ++ +N+ +I G +G + + + G
Sbjct: 91 VIPVSFF---EEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKA 147
Query: 715 FATXYGKIAVNICFGRXXVLNWMMFGXNGPEIVFNPS 825
F T Y I V IC+ + G EI+F P+
Sbjct: 148 FKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPT 184
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 34.7 bits (76), Expect = 0.099
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 397 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILERDEK 570
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSI--PER 68
Query: 571 HSDILWNTAVVISDTGNV 624
S L+NT VI G +
Sbjct: 69 SSGRLFNTCCVIGPDGQI 86
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 32.3 bits (70), Expect = 0.53
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 19/185 (10%)
Frame = +1
Query: 337 AIFNKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TREKQPWCEFAESAE 483
A +K +K++ A G I+ F E++ F + K+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 484 D--GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGEASQEPHSE 657
D GP T L LA KY + +V ++ER L+NT + G +G+ + +
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRKVMPTG 163
Query: 658 SRRX*RIPLLHGRYXGHPVFATXYGKIAVNICF-GRXXVLNWMMFGXN-----GPEIVFN 819
R + G PV+ T GKI IC+ R +L M+ P F+
Sbjct: 164 LER---VFWGFGDGSTIPVYDTPIGKIGAVICWENRMPLLRTAMYAKGVQIYCAPTADFS 220
Query: 820 PSRQS 834
PS Q+
Sbjct: 221 PSWQA 225
>10_08_0747 - 20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +1
Query: 412 LWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWN 591
+WN+ + +E QP E A +D R++ + + ++ D D+ W+
Sbjct: 765 VWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPLAPDASADAAGDDMSWS 823
Query: 592 TAVVISDTGNVIGE-ASQEPHSESRR 666
+ TGNV + S++ S + R
Sbjct: 824 ETASFTATGNVFSQIMSRDDRSRAPR 849
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 30.7 bits (66), Expect = 1.6
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Frame = +1
Query: 487 GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGEASQEPHSESRR 666
GP T L +A KY + +V ++ER+ L+ + + G +G+ + +
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRKLMPTALE- 169
Query: 667 X*RIPLLHGRYXGHPVFATXYGKIAVNICF-GRXXVLNWMMFGXNGPEIVFNPSRQS 834
RI G PV+ T GKI IC+ + +L ++G G EI P+ S
Sbjct: 170 --RIIWGFGDGSTIPVYDTPLGKIGALICWENKMPLLRTALYG-KGIEIYCAPTADS 223
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 488 PSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSW 378
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 461 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 330
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255
Length = 190
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 685 VVGFVKXADSRNVVLAMLPRSRFRCH**QPQCSKVCP-NASRPFLISRTRSP 533
++ +VK + + L P R H +P S+ CP ++S PF + R P
Sbjct: 30 LLSYVKSCAVKKLKLVCKPLPNVRLHLCRPYGSRCCPSSSSSPFALRHPRHP 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,508,925
Number of Sequences: 37544
Number of extensions: 469569
Number of successful extensions: 1221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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