Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_M06
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 233 2e-62
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 34 0.032
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 32 0.13
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 29 0.68
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.68
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.68
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.90
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.6
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.8
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 4.8
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 233 bits (571), Expect = 2e-62
Identities = 107/153 (69%), Positives = 126/153 (82%), Gaps = 1/153 (0%)
Frame = +1
Query: 280 DFKIEP-SESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFIN 456
DF I+P + S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN
Sbjct: 9 DFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68
Query: 457 VDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEY 636
+DKP+NPSSHEVV+W+K+IL+VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEY
Sbjct: 69 LDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEY 128
Query: 637 VAVFNLHSAVENIQKVTQGLEKLRGALFXXPGL 735
V V LH +VE + V +E L GALF P L
Sbjct: 129 VCVLRLHDSVEGERNVASAIETLTGALFQRPPL 161
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 726 PRVISXVKRQLRVRTVXE 779
P +IS VKRQLR+R++ E
Sbjct: 159 PPLISAVKRQLRIRSIYE 176
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 526 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 642
K GH GTLDP +G L+V + T+ + S + K Y A
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRA 145
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/79 (30%), Positives = 39/79 (49%)
Frame = +1
Query: 460 DKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 639
+KP PS H ++S+ K+E T ++ T K G IV R S +N GKE V
Sbjct: 563 EKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV--PRGN--YYSIKNIGKEAV 618
Query: 640 AVFNLHSAVENIQKVTQGL 696
++ H A + ++ +G+
Sbjct: 619 RLYYTH-ATDTLENKRRGI 636
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 29.5 bits (63), Expect = 0.68
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = +1
Query: 451 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGK 630
IN D P P SHE+V IL SG + P+ CI+ K N G
Sbjct: 76 INEDDPQEPKSHEIV-----ILLASDGRSSGNMAPETFN---QCIENRINYAK-HHNYGF 126
Query: 631 EYVAVFNLH 657
EYV V ++
Sbjct: 127 EYVNVSQMN 135
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.68
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 433 YVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 540
++K + +D+P+N E V+W++ L E GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 334 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 423
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.90
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 349 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHE 489
++DR + + NH +P P +P K P+ + ++ N D + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 337 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 447
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 328 KRCPASSRSPKVRF*SRQLSEKLPTKHHPCFFSFSSLKVCRYRAAVPPSF 179
KRC A+++ ++ R+L E LP K P S S+ Y +++ P F
Sbjct: 23 KRC-ANNQIEELMVRIRELRESLPNKQTPISMSMSTRLSPMYTSSLTPRF 71
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 362 KRSKFFNNKGQ*AVSSFFT 306
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.8
Identities = 31/118 (26%), Positives = 48/118 (40%)
Frame = +1
Query: 151 VRKDTC*FIKMTEVLQPGNDTLSEKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAY 330
+++D + ++ G S K +K NK ++ G+ PS SV +++
Sbjct: 136 MKEDITPVVNTSKQSSTGTQEESSKPEKSNKL-LAKSTLSLYGNQAFNPS-SVLPSNSSS 193
Query: 331 WPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWI 504
P ++ NV Y P F SPLK S N+ PS PSS VS +
Sbjct: 194 TP----KENKKNVNKETYQPNTFRRSPLKNDTGSVELS---NLYMPSPPSSALPVSLV 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,722
Number of Sequences: 5004
Number of extensions: 74858
Number of successful extensions: 229
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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