Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_M06
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical pr...   240   8e-64
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    29   4.5  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    29   4.5  
U61945-4|AAB03127.2|  172|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode asta...    28   7.9  

>Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical
           protein K01G5.5 protein.
          Length = 445

 Score =  240 bits (588), Expect = 8e-64
 Identities = 112/174 (64%), Positives = 130/174 (74%)
 Frame = +1

Query: 214 LSEKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPL 393
           + +K K+   +G  L   Q  G F++  S    KLD + WPLLLKN+D+LNVRTNHYTP 
Sbjct: 1   MGKKDKRSKLEGDDLAEAQQKGSFQLPSSNETAKLDASQWPLLLKNYDKLNVRTNHYTPH 60

Query: 394 PFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCL 573
             G SPLKR I +Y+ SGF N+DKPSNPSSHEVVSWIKRIL+ EKTGHSGTLDPKV+GCL
Sbjct: 61  VEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEVVSWIKRILRCEKTGHSGTLDPKVSGCL 120

Query: 574 IVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALFXXPGL 735
           IVCIDR TRL KSQQ AGKEY+ +F LH  VE+ +KV Q LEKL GALF  P L
Sbjct: 121 IVCIDRTTRLAKSQQGAGKEYICIFKLHEEVEDDRKVKQALEKLTGALFQRPPL 174



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +3

Query: 726 PRVISXVKRQLRVRTVXE 779
           P +IS VKRQLR+RTV E
Sbjct: 172 PPLISAVKRQLRIRTVYE 189


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 621 RWQRVCSRFQLAFSRREYSKSHTGLG----EAAWSSIXXPRVISXVKRQLRVR 767
           RW ++ SR Q  F    Y K H  +G      A  S+   + +S VKR+ R R
Sbjct: 576 RWHKIRSRIQKKFDFHAYHKKHP-IGPITPRKAGDSVKQTKQLSAVKRRRRAR 627


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 621 RWQRVCSRFQLAFSRREYSKSHTGLG----EAAWSSIXXPRVISXVKRQLRVR 767
           RW ++ SR Q  F    Y K H  +G      A  S+   + +S VKR+ R R
Sbjct: 576 RWHKIRSRIQKKFDFHAYHKKHP-IGPITPRKAGDSVKQTKQLSAVKRRRRAR 627


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 621 RWQRVCSRFQLAFSRREYSKSHTGLG----EAAWSSIXXPRVISXVKRQLRVR 767
           RW ++ SR Q  F    Y K H  +G      A  S+   + +S VKR+ R R
Sbjct: 576 RWHKIRSRIQKKFDFHAYHKKHP-IGPITPRKAGDSVKQTKQLSAVKRRRRAR 627


>U61945-4|AAB03127.2|  172|Caenorhabditis elegans Hypothetical
           protein C49C8.2 protein.
          Length = 172

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 595 TRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLEKLRGALF 720
           T L +  Q++ KE ++ FN H   + +QKV   ++   G  F
Sbjct: 42  TMLERVSQSSNKELISDFNKHQIPQRLQKVASLVKNSHGHYF 83


>AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode astacin
           protease protein27 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 707 RSFSKPCVTF*IFSTAECKLKTATYSLPAFCCD 609
           ++   PC     F+  E KL   T + P FCCD
Sbjct: 356 KNIISPCSMSCSFNALELKLSNFTMTGPRFCCD 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,796,722
Number of Sequences: 27780
Number of extensions: 420348
Number of successful extensions: 1093
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)