Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_L24
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   313   2e-86
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   312   3e-86
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.0  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   7.9  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   7.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  313 bits (768), Expect = 2e-86
 Identities = 144/252 (57%), Positives = 183/252 (72%)
 Frame = +2

Query: 59  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 238
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 239 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 418
           PGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW
Sbjct: 63  PGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW 122

Query: 419 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRXKKAHIME 598
           +             + +    +SI ++ +++ +YCSVVRV+AHTQ++      KKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 599 IQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDXMIDCIXXXXXXXXXXXXSRWHTXXLPR 778
           IQ+NGG++ DKV+WAREH EK + + S F Q+ MID I            +RW T  LPR
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR 240

Query: 779 KNTRVLGKLPAL 814
           K  R L K+  +
Sbjct: 241 KTHRGLRKVACI 252



 Score = 34.3 bits (75), Expect = 0.023
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 784 HKGLRKVACIGXWH 825
           H+GLRKVACIG WH
Sbjct: 243 HRGLRKVACIGAWH 256


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  312 bits (767), Expect = 3e-86
 Identities = 143/252 (56%), Positives = 183/252 (72%)
 Frame = +2

Query: 59  HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 238
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DR
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 239 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 418
           PGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW
Sbjct: 63  PGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW 122

Query: 419 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRXKKAHIME 598
           +             + +    +SI ++ +++ +YCSVVRV+AHTQ++      KKAH+ME
Sbjct: 123 FKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLME 180

Query: 599 IQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDXMIDCIXXXXXXXXXXXXSRWHTXXLPR 778
           IQ+NGG++ DKV+WAREH EK + + S F Q+ MID I            +RW T  LPR
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR 240

Query: 779 KNTRVLGKLPAL 814
           K  R L K+  +
Sbjct: 241 KTHRGLRKVACI 252



 Score = 34.3 bits (75), Expect = 0.023
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 784 HKGLRKVACIGXWH 825
           H+GLRKVACIG WH
Sbjct: 243 HRGLRKVACIGAWH 256


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 327 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 479
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 7   KNHVESSILVATVFQHVAQKIFSTPSWVYGILSQKEVPSSSW 132
           K+H  ++      F+   ++ +ST +    ILS  +VPSS W
Sbjct: 143 KSHPATNANFTADFESSIEESYSTENKSPVILSSSKVPSSQW 184


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 229 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 65
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,300
Number of Sequences: 5004
Number of extensions: 70496
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)