Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_L24
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 304 6e-83
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 301 4e-82
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
11_01_0710 - 5830475-5830595,5831498-5834124 30 2.7
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 3.6
05_04_0324 - 20273797-20274261 29 4.8
01_05_0125 - 18382402-18382761,18382863-18383036 28 8.4
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 304 bits (746), Expect = 6e-83
Identities = 141/253 (55%), Positives = 180/253 (71%), Gaps = 1/253 (0%)
Frame = +2
Query: 59 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 238
HRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++
Sbjct: 3 HRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEK 62
Query: 239 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 418
PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNW 122
Query: 419 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRXKKAHIM 595
+ + G+K I+ +KM +Y S+VRVIAHTQ++ +K + KKAH+M
Sbjct: 123 CKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLM 182
Query: 596 EIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDXMIDCIXXXXXXXXXXXXSRWHTXXLP 775
EIQ+NGGTI DKV + + EK IPVD+VF +D MID I +RW LP
Sbjct: 183 EIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
Query: 776 RKNTRVLGKLPAL 814
RK R L K+ +
Sbjct: 243 RKTHRGLRKVACI 255
Score = 34.3 bits (75), Expect = 0.13
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 784 HKGLRKVACIGXWH 825
H+GLRKVACIG WH
Sbjct: 246 HRGLRKVACIGAWH 259
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 301 bits (739), Expect = 4e-82
Identities = 140/253 (55%), Positives = 179/253 (70%), Gaps = 1/253 (0%)
Frame = +2
Query: 59 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 238
HRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++
Sbjct: 3 HRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEK 62
Query: 239 PGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 418
PGSK++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 63 PGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNW 122
Query: 419 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRXKKAHIM 595
+ + G+K I+ +KM +Y SVVRVI HTQ++ +K + KKAH+M
Sbjct: 123 CKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLM 182
Query: 596 EIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDXMIDCIXXXXXXXXXXXXSRWHTXXLP 775
EIQ+NGGTI DKV + + EK IPVD+VF +D MID I +RW LP
Sbjct: 183 EIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLP 242
Query: 776 RKNTRVLGKLPAL 814
RK R L K+ +
Sbjct: 243 RKTHRGLRKVACI 255
Score = 34.3 bits (75), Expect = 0.13
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +1
Query: 784 HKGLRKVACIGXWH 825
H+GLRKVACIG WH
Sbjct: 246 HRGLRKVACIGAWH 259
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 487 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 603
N +RF +DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 708 QSIXSSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 589
+S+ SSW + TG S CS+ + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 587 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDS 679
H++E + N ++++K+K +H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 146 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 319
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 320 VGYIETPHGLRAL 358
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
>01_05_0125 - 18382402-18382761,18382863-18383036
Length = 177
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 401 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 297
++ +L PPR ST R+V E C+ + R + +E
Sbjct: 47 ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,616,769
Number of Sequences: 37544
Number of extensions: 497288
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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