Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_L18
         (1437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.55 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   7.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   8.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 786 PPPPPPPXXXKKKK 827
           PPPPPPP   KK+K
Sbjct: 24  PPPPPPPGYVKKRK 37



 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 787 PPPPPPXXXKKKKXK 831
           PPPPPP   KK+K K
Sbjct: 25  PPPPPPGYVKKRKNK 39



 Score = 25.0 bits (52), Expect(2) = 0.55
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 789 PPPPPPXXXKKKKXXK 836
           PPPPPP    KK+  K
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 23.8 bits (49), Expect(2) = 0.55
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 786 PPPPPPP 806
           PPPPPPP
Sbjct: 10  PPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 786  PPPPPPPXXXKKK 824
            PPPPPPP   +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect(2) = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 998 PPPPPXPPXXI 966
           PPPPP PP  +
Sbjct: 775 PPPPPPPPPAV 785



 Score = 21.0 bits (42), Expect(2) = 7.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 1001 PPPPPP 984
            PPPPPP
Sbjct: 732  PPPPPP 737


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
            Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 1001 PPPPPPXPPXXIF 963
            PPPPPP PP   F
Sbjct: 306  PPPPPPPPPSNDF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,054
Number of Sequences: 5004
Number of extensions: 17790
Number of successful extensions: 403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 800832734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)