Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_L18
         (1437 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL365445-2|CAI22836.1|  342|Homo sapiens DMRT-like family B with...    26   6.0  
AK057273-1|BAB71407.1|  342|Homo sapiens protein ( Homo sapiens ...    26   6.0  
AJ291671-1|CAC40654.1|  336|Homo sapiens doublesex-mab-3 (DM) do...    26   6.0  
BC029566-1|AAH29566.1|  189|Homo sapiens DMRTB1 protein protein.       26   6.4  

>AL365445-2|CAI22836.1|  342|Homo sapiens DMRT-like family B with
            proline-rich C-terminal, 1 protein.
          Length = 342

 Score = 26.2 bits (55), Expect(2) = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 1001 PPPPPPXPP 975
            PPPPPP PP
Sbjct: 265  PPPPPPLPP 273



 Score = 24.2 bits (50), Expect(2) = 6.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 998 PPPPPXPPXXIF 963
           PPPPP PP   F
Sbjct: 296 PPPPPPPPPSSF 307


>AK057273-1|BAB71407.1|  342|Homo sapiens protein ( Homo sapiens cDNA
            FLJ32711 fis, clone TESTI2000707, weakly similar to
            DOUBLESEX PROTEIN, MALE-SPECIFIC. ).
          Length = 342

 Score = 26.2 bits (55), Expect(2) = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 1001 PPPPPPXPP 975
            PPPPPP PP
Sbjct: 265  PPPPPPLPP 273



 Score = 24.2 bits (50), Expect(2) = 6.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 998 PPPPPXPPXXIF 963
           PPPPP PP   F
Sbjct: 296 PPPPPPPPPSSF 307


>AJ291671-1|CAC40654.1|  336|Homo sapiens doublesex-mab-3 (DM) domain
            protein.
          Length = 336

 Score = 26.2 bits (55), Expect(2) = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 1001 PPPPPPXPP 975
            PPPPPP PP
Sbjct: 259  PPPPPPLPP 267



 Score = 24.2 bits (50), Expect(2) = 6.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 998 PPPPPXPPXXIF 963
           PPPPP PP   F
Sbjct: 290 PPPPPPPPPSSF 301


>BC029566-1|AAH29566.1|  189|Homo sapiens DMRTB1 protein protein.
          Length = 189

 Score = 26.2 bits (55), Expect(2) = 6.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 1001 PPPPPPXPP 975
            PPPPPP PP
Sbjct: 112  PPPPPPLPP 120



 Score = 24.2 bits (50), Expect(2) = 6.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 998 PPPPPXPPXXIF 963
           PPPPP PP   F
Sbjct: 143 PPPPPPPPPSSF 154


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,188,901
Number of Sequences: 237096
Number of extensions: 1693619
Number of successful extensions: 64666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27506
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 21101516590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)