Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_L18
         (1437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    24   0.60 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    24   0.60 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    24   0.62 
Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical p...    29   6.1  
Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical p...    29   6.1  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    24   8.1  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 23.8 bits (49), Expect(3) = 0.60
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1000 PPPPPPP 980
            PPPPPPP
Sbjct: 742  PPPPPPP 748



 Score = 23.4 bits (48), Expect(3) = 0.60
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 997 PPPPPPXP 974
           PPPPPP P
Sbjct: 758 PPPPPPPP 765



 Score = 22.2 bits (45), Expect(3) = 0.60
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 994 PPPPPXPXXF 965
           PPPPP P  F
Sbjct: 784 PPPPPPPGMF 793


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 23.8 bits (49), Expect(3) = 0.60
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1000 PPPPPPP 980
            PPPPPPP
Sbjct: 742  PPPPPPP 748



 Score = 23.4 bits (48), Expect(3) = 0.60
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 997 PPPPPPXP 974
           PPPPPP P
Sbjct: 758 PPPPPPPP 765



 Score = 22.2 bits (45), Expect(3) = 0.60
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 994 PPPPPXPXXF 965
           PPPPP P  F
Sbjct: 784 PPPPPPPGMF 793


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 23.8 bits (49), Expect(3) = 0.62
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1000 PPPPPPP 980
            PPPPPPP
Sbjct: 325  PPPPPPP 331



 Score = 23.4 bits (48), Expect(3) = 0.62
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 997 PPPPPPXP 974
           PPPPPP P
Sbjct: 341 PPPPPPPP 348



 Score = 22.2 bits (45), Expect(3) = 0.62
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 994 PPPPPXPXXF 965
           PPPPP P  F
Sbjct: 367 PPPPPPPGMF 376


>Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical
            protein F32D8.7b protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 1000 PPPPPPPXPXXFLXFF 953
            PPPPPPP P  F+  F
Sbjct: 248  PPPPPPPAPSPFVDAF 263


>Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical
            protein F32D8.7a protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 1000 PPPPPPPXPXXFLXFF 953
            PPPPPPP P  F+  F
Sbjct: 246  PPPPPPPAPSPFVDAF 261


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 23.8 bits (49), Expect(2) = 8.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1000 PPPPPPP 980
            PPPPPPP
Sbjct: 1357 PPPPPPP 1363



 Score = 23.4 bits (48), Expect(2) = 8.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 997  PPPPPPXP 974
            PPPPPP P
Sbjct: 1390 PPPPPPLP 1397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,849
Number of Sequences: 27780
Number of extensions: 209107
Number of successful extensions: 9336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3887
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4100231132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)