Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_L14
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 39 7e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.081
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.0
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPPPXXFFXXXGGGXFFXXPP 753
PPPPPP G PPPPP GG ++ P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 29.9 bits (64), Expect = 0.43
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPPP 702
P P PP GG PPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPP 766
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 649 PPPPPXXXXXGGXPPPPP 702
P PPP G PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Frame = -3
Query: 763 PPPX---GGXKKXPPPXGXKKXXRGGGGGXPPXXXXXGGGGGGXXFXXXXXXGEPPP 602
PPP GG PPP G G G PP GG + EP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGV-----AGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPPPXXFFXXXGGGXFFXXPPXG 759
PPPPPP P P P GG PP G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.081
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPPPXXF 711
PPPPPP PPPPP +
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGY 32
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPPP 702
PPPPPP PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPPP 702
PPPPPP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPP 699
PPPPPP G P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPP 355
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPP 699
PPPPPP G PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPPP 702
PPPPPP G P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPP 693
PPPPPP G PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPP 699
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 733 PPPXGXKKXXRGGGGGXPPXXXXXGGGGG 647
PPP G R GGG P GG GG
Sbjct: 100 PPPRGPLFGPRIGGGHHGPLHGPHGGFGG 128
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 9.3
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = -3
Query: 751 GGXKKXPPPXGXKKXXRGGGGGXPPXXXXXGGGGGG 644
GG PPP GG GG GG GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +1
Query: 646 PPPPPPXXXXXGGXPPPPP 702
PPPPPP G P P
Sbjct: 1882 PPPPPPMALPKAGPPSAAP 1900
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,094
Number of Sequences: 5004
Number of extensions: 29854
Number of successful extensions: 244
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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