Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_L10
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    28   1.9  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    26   7.8  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 125 PPRVEPPRSNYTFAGAPFPPRAEVATPP 42
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 260 AYRPWLFRPVLAQDSRKGTDGAVPPL 337
           A+ PW +R  LAQ  +   +  +PP+
Sbjct: 425 AFEPWYYRKCLAQGGKPDPEARLPPM 450


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 319 VGSLPAILCKYRPKQPWPVSICVSRKVRHPRSRP 218
           + S P  L K+R + P    IC  RKV+  R +P
Sbjct: 1   MSSSPPALKKFRKRSPKSCLICRRRKVKCDRQQP 34


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 333 HCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVV 458
           HC     E+    T + C G   Q+    A  GED  LP VV
Sbjct: 14  HCPGPSSENAG--TASACEGCPNQQICASAPRGEDPDLPLVV 53


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -2

Query: 248 PEGEASAVAAH--PVRENRADRLDGSEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 90
           P   AS + ++  PV E      + + +G    R RQ  R R    P  PRV  P   Y 
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270

Query: 89  FAGAPFPPRAEVATPPVIGS 30
                +PP    A P   GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,825
Number of Sequences: 5004
Number of extensions: 36172
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)