Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_L10
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 30 1.8
Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 29 4.2
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 28 7.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 7.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 7.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 7.3
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 28 9.7
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 28 9.7
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -2
Query: 182 GSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPP 42
G+ G RQA + H PP V PP+ A P P + VA PP
Sbjct: 259 GARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301
>Z69360-4|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = -2
Query: 209 RENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGS 30
R+ A+ +EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPC 122
Query: 29 ERLRLQVPQ 3
+R + PQ
Sbjct: 123 QRPQPPQPQ 131
>Z69360-3|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = -2
Query: 209 RENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGS 30
R+ A+ +EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPC 122
Query: 29 ERLRLQVPQ 3
+R + PQ
Sbjct: 123 QRPQPPQPQ 131
>Z69360-2|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = -2
Query: 209 RENRADRLDGSEAGRRVRQAARPRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGS 30
R+ A+ +EA R R+ R R P PPR+N P PP + P
Sbjct: 63 RQQSAEERARAEADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPC 122
Query: 29 ERLRLQVPQ 3
+R + PQ
Sbjct: 123 QRPQPPQPQ 131
>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
protein C27B7.7 protein.
Length = 1471
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 63 SRGEGRPSEGVVRARRLHSRRSVLEAWSRRLADPSAGL 176
+RG+ RPS V + R ++ + ++ WSR A SAG+
Sbjct: 469 ARGKPRPSISVAISDRKNASQVEVDVWSRLQATSSAGI 506
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/50 (24%), Positives = 29/50 (58%)
Frame = +2
Query: 347 RRGRHSGTHAGALLWIRRATRRPRRGHWRGPLAAARRGYDARQRRVLEGD 496
++ +H + G L+ I++ T+R +RG + PL + A+++++ + D
Sbjct: 625 KKSKHKASRNGKLVRIKKKTKRVKRGKFVRPLMPRIPKFVAKKKKLKKVD 674
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -2
Query: 143 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIG 33
P + GPP PP G P PP PP+ G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -2
Query: 143 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIG 33
P + GPP PP G P PP PP+ G
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -2
Query: 143 PRLQHGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIG 33
P + GPP PP G P PP PP+ G
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 339
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 158 RQAARPRLQ--HGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRL 15
++ +RP L+ G R PR+N T AGAP A+ P I R L
Sbjct: 13 QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 158 RQAARPRLQ--HGPPRVEPPRSNYTFAGAPFPPRAEVATPPVIGSERLRL 15
++ +RP L+ G R PR+N T AGAP A+ P I R L
Sbjct: 13 QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,313,886
Number of Sequences: 27780
Number of extensions: 254512
Number of successful extensions: 1063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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