Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_L07
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.88 
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    28   2.0  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    27   2.7  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   8.2  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 93  ARKIRGRPENAGPDPVRNVRRFSRV 19
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -3

Query: 577 NNESSGFSATIARNDLPLMQHLSCLLTMPD*S-----QAQPGSSFPADSPKPVPLAVVSL 413
           N+E + F   I R D   + H SC  T P        QA PG SF +++   +PL  ++L
Sbjct: 535 NSEEAEFGLPIKR-DYGSILHPSCSQTFPPYPGSQLLQATPGRSFSSNAEALLPLNYITL 593

Query: 412 DSR 404
            S+
Sbjct: 594 LSK 596


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 759 TDVPPQSTPRLAVSSNRITREF*TAT 682
           T VPP+  P L+VS NR+ +   T T
Sbjct: 94  TSVPPEQDPSLSVSFNRLPKSASTKT 119


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -1

Query: 753 VPPQSTPRLAVSSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVS-NE 577
           +P  STP L+ +S+ ++ +   A  +  ++PL  + T+  + A  + +       V  N 
Sbjct: 309 LPQFSTPNLSSNSSSLSLKSTLAEGMKGSTPLAAVKTEKASKAARVMKQKKHREHVCFNC 368

Query: 576 TMKVVVFQRRSRETISHLCN 517
            +      RR+ + ++ LCN
Sbjct: 369 GVTETPLWRRTSDKLNFLCN 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,611
Number of Sequences: 5004
Number of extensions: 66157
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)