Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_L07
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    30   2.5  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.3  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.3  
Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 27/89 (30%), Positives = 38/89 (42%)
 Frame = -1

Query: 840 LXXPXLPFXPREXLSSXXWP*TPXLFLTDVPPQSTPRLAVSSNRITREF*TATSVSATSP 661
           L  P +P       SS   P TP   +T V   +T +  V +   T    + T +  TSP
Sbjct: 575 LTTPTVPVTTTVVPSSATVPTTPPTTVT-VAATTTSKAPVVTTSPTLAPTSPTKLP-TSP 632

Query: 660 LCTLGTKHRAPADIIDRAPLPPNRVSNET 574
             T+GT   APA++      P N  S+ T
Sbjct: 633 PSTVGTSPTAPANLTTPTTAPVNPTSSTT 661


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 27/89 (30%), Positives = 38/89 (42%)
 Frame = -1

Query: 840 LXXPXLPFXPREXLSSXXWP*TPXLFLTDVPPQSTPRLAVSSNRITREF*TATSVSATSP 661
           L  P +P       SS   P TP   +T V   +T +  V +   T    + T +  TSP
Sbjct: 631 LTTPTVPVTTTVVPSSATVPTTPPTTVT-VAATTTSKAPVVTTSPTLAPTSPTKLP-TSP 688

Query: 660 LCTLGTKHRAPADIIDRAPLPPNRVSNET 574
             T+GT   APA++      P N  S+ T
Sbjct: 689 PSTVGTSPTAPANLTTPTTAPVNPTSSTT 717


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 172 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 303
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 172 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 303
           W+  G   C+ + K CDG + C       QCS+     +   AG
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310


>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 17  DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 157
           D    +L  R   G   +G   IF  VR    RF++ R D++  PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,824,286
Number of Sequences: 27780
Number of extensions: 390305
Number of successful extensions: 1035
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)