Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_K12
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.16
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 2.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 2.0
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 27 2.6
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.5
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 27 3.5
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.6
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 27 4.6
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 6.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 8.1
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 8.1
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 538 PSPAISATSTRSSN---PRFHTPTTPDLTSIS-INPLTPYXKEFAPGXKP 675
P P+IS T+T SS H PTTPD ++ + L P +P KP
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKKP 322
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +3
Query: 279 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 458
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 459 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 599
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGXKPRLSSXAPSAYLTP 714
PP PA ++++ SS+P + +T TS SI P P P +S +
Sbjct: 316 PPPPASTSSTGTSSSP-LPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPA 374
Query: 715 SSLGXAKGVSPLISS 759
S+ SPL+S+
Sbjct: 375 STSSTGTSSSPLLST 389
Score = 27.9 bits (59), Expect = 2.0
Identities = 27/101 (26%), Positives = 42/101 (41%)
Frame = +1
Query: 535 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGXKPRLSSXAPSAYLTP 714
PP PA ++++ SS+P T +T TS SI P P P SS +
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCT 428
Query: 715 SSLGXAKGVSPLISSE**ITSFAPYKSSFXHTRXPSSXHPL 837
+S +P+ S+ T+ +S +T P + PL
Sbjct: 429 TSTSVPYTSTPVTSTP-LATTNCTTSTSVPYTSTPVTSTPL 468
Score = 27.9 bits (59), Expect = 2.0
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +3
Query: 291 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 464
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 465 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 599
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 279 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 449
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 450 DVTVEGVNVLATPSSS 497
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 532 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 645
+PPS A+ + + P P P + + NP TP+
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF 282
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Frame = +1
Query: 529 IKPPSPAISATSTRSSNPRFHTP----TTPDLTSISINPLTPYXKEFAPGXKPRLSSXAP 696
+ +P S+T+ +S P + +TP +S ++N TP ++S
Sbjct: 1578 VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1637
Query: 697 SAYLTPSSLGXAKGVSPLISSE**ITSFAPYKSS 798
TP + A SP I+S + S P SS
Sbjct: 1638 LNSSTPITSSTALNTSPPITSSTVVNSSTPITSS 1671
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +1
Query: 559 TSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGXKPRLSSXAPSAYLTPSSLGXAKG 738
TST ++ +TP +S +N TP A P ++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 739 VSPLISSE**ITSFAPYKSS 798
S I+S + S P SS
Sbjct: 1676 TSTPITSSTVVNSSTPITSS 1695
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/86 (25%), Positives = 34/86 (39%)
Frame = +1
Query: 541 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGXKPRLSSXAPSAYLTPSS 720
S + TST ++ +TP +S +N TP A ++S + TP +
Sbjct: 1718 SSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1777
Query: 721 LGXAKGVSPLISSE**ITSFAPYKSS 798
A S I+S + S P SS
Sbjct: 1778 SSTALNTSTPITSSSVLNSSTPITSS 1803
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 643 YXKEFAPGXKPRLSSXAP---SAYLTPSSLGXAKGVSPLIS 756
Y K F P PRL S P + +TP+S+ +GV+ +S
Sbjct: 340 YGKNFLPQITPRLDSVVPLISDSPMTPNSVYSNEGVTSSVS 380
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 526 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 407
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 261 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 374
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 770 IHHSLEIRGETPLAMPSDEGVRYADGA 690
IHH++ +R ++P+ P VR+ D A
Sbjct: 61 IHHAIIVRTKSPVRRPDGRYVRFDDNA 87
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 541 SPAISATSTRSSNPRFHT-PTTPD---LTSISINPLTPYXKEFAPGXKPRLSSXAPSAYL 708
S + SAT+T S+ T P T ++SIS + + + L+S +AY+
Sbjct: 344 SSSASATATSSAESSIATSPITSSSNVVSSISTSSMDSSAVSSYSVVQSSLASIISNAYI 403
Query: 709 TPSSLGXAKGVSPLISS 759
S G GVS L++S
Sbjct: 404 ATSKSGLNSGVSTLLAS 420
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 541 SPAISATSTRSSNPRFHTPTTPDLTSIS 624
S IS +ST N FH PT TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 342 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 431
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 532 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGXKPRLSSXAPSAYLT 711
+PPSP I R+S F +PT S+ + + G P SS A A+L+
Sbjct: 494 RPPSPGIVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGISPSHSS-ASLAHLS 552
Query: 712 PSS 720
+S
Sbjct: 553 QAS 555
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +1
Query: 547 AISATSTRSSNPRFHTPTTPDLTSISINPLTPYXKEFAPGXKPRLSSXAPSAYLTPSS 720
A+ ++ S F PTT S+SI+P K A +P + + S TP++
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISP----TKSAAVSSEPNVEADVKSLSSTPAA 122
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 764 HSLEIRGETPLAMPSDEGVRYADGAS 687
H +++ G TP +MPS+ Y +GA+
Sbjct: 850 HMVDVGGITPGSMPSNSKAIYEEGAA 875
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 511 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 377
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,446
Number of Sequences: 5004
Number of extensions: 67200
Number of successful extensions: 330
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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