Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_K08
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1008 - 29644352-29645297,29645381-29645769 32 0.69
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.91
07_01_0544 + 4012457-4012796,4012897-4013069 30 2.1
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 30 2.8
11_06_0610 - 25449085-25453284 29 3.7
02_04_0452 + 23044190-23045227 29 3.7
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.7
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 29 4.9
04_01_0041 - 464695-464850,467485-469029 29 6.4
01_05_0227 - 19512866-19514983 29 6.4
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 8.5
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.5
>03_05_1008 - 29644352-29645297,29645381-29645769
Length = 444
Score = 31.9 bits (69), Expect = 0.69
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = -1
Query: 716 CPVTRG*DTLMEXLMTTGGFNPGANSX*YG-VRGLMXMDVKSGVVGVWNRGFDDRVDVAE 540
C V G DT+ + GGF G YG G + +D G + W+ + V+V E
Sbjct: 338 CLVGTGVDTVESLVYGEGGFEAGPEKVVYGDGDGTVNLDSLVGPIKAWSDSPEQVVEVVE 397
Query: 539 IAGEGGLMHKGETANSNARG*RGGQHIDSFNCDVSSSPTKVN 414
+ + H G + +A + + ID+ N + ++S + +N
Sbjct: 398 LP---EVSHSGILKDKSALD-QILRIIDAINLNATTSSSSIN 435
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.91
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 535 AISATSTRSSNPRFHTPTTP 594
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>07_01_0544 + 4012457-4012796,4012897-4013069
Length = 170
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 514 CIKPPSPAISATSTRSSNPRFHTPTTPDLTSIXINPLTPYXKEFAPGLKPPVVIRXSISV 693
C P + S ++ P TPTTP T P TP AP PV I I V
Sbjct: 102 CKVQTPPVSNCKSGAAAPPAGQTPTTPAGTGSKATPATPVGSGVAPLRVSPVGILAGIVV 161
Query: 694 S 696
+
Sbjct: 162 A 162
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 517 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSIXINPLTP 630
I PPSPA + S+R S +PR F TP T T+ +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 523 PPSPAISATSTRSSNPRFHTPTTPDLT-SIXINPLTPYXKEFAP 651
PP+P A+S P HTP+ P+ T +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 523 PPSPAISATSTRSSNPRFHTPTTPDLT-SIXINPLTPYXKEFAP 651
PP+P A+S P HTP+ P T +P TP + +P
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP 694
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 470 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 592
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 273 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 446
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 447 VEGVNVLATPSSSRITIGGLALMHQ 521
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = +1
Query: 526 PSPAISATSTRSSNPRFHTPTTPDLTSIXINPLTPYXKEFAP------GLKPPVVIRXSI 687
P+P ++A S+R NP PD+T+ ++ + Y + +P + P I
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSPTELSFDDRRVPYNIMSGT 506
Query: 688 SVSHPLVTG 714
S+S P V+G
Sbjct: 507 SMSCPHVSG 515
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 234 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 410
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 411 TVD 419
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 451 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 359
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 523 PPSPAISATSTR-SSNPRFHTPTTPDLTSIXINPLTPYXKEFAPGLKPPVVIRXSISVSH 699
P +PA +A+S+ ++ P TPT+P S + TP P PP R S S
Sbjct: 35 PLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPK 94
Query: 700 P 702
P
Sbjct: 95 P 95
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 225 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 404
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 405 PVTVDLCWTTADVTVEGVNVLATPSS 482
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,657,338
Number of Sequences: 37544
Number of extensions: 468077
Number of successful extensions: 1392
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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