Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_K04
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0907 - 22490158-22490555,22490647-22491250                       30   2.6  
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645...    30   2.6  
01_05_0606 - 23607170-23607568,23607738-23607941,23608035-236081...    29   3.5  
01_06_1313 - 36212524-36213669                                         29   4.6  
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366...    28   8.0  
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312...    28   8.0  
07_03_1096 + 23931862-23931931,23932406-23932549,23932888-239329...    28   8.0  

>07_03_0907 - 22490158-22490555,22490647-22491250
          Length = 333

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 174 PARARYNEDMQTWQ---GRTETGSEGGEPLPP 260
           P  AR+ +   TW+   GR ++GS GGE  PP
Sbjct: 231 PPLARHLKKSDTWETRPGRRQSGSGGGEDAPP 262


>06_02_0064 + 11062798-11063568,11064212-11064261,11064354-11064510,
            11064598-11064816,11065301-11065429,11066502-11068031,
            11068654-11069013,11069086-11069205,11069727-11069897,
            11070022-11070180,11070327-11070452,11070660-11070968
          Length = 1366

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 558  SISVIASA-SPNRPPTNLLTILDTEPQTGIEETL 656
            S S   SA S + PP+N+   +D  PQ GI+ETL
Sbjct: 917  STSTYNSADSSHEPPSNVNPPIDNVPQVGIQETL 950


>01_05_0606 -
           23607170-23607568,23607738-23607941,23608035-23608113,
           23608371-23608430,23608514-23608611,23608703-23608891,
           23610670-23611368
          Length = 575

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 231 GSEGGEPLPPANIPIDAVWQPVAGTR 308
           G  G EP PP   P +++W P+   R
Sbjct: 106 GDNGDEPRPPTVAPAESLWAPIGWRR 131


>01_06_1313 - 36212524-36213669
          Length = 381

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 562 MDPPTVSCGFTPESFSKHRTYVALYFKFQFSLIALTRALSVSV 434
           M PPT S      SF  HR+ V  +F     L+A   AL V V
Sbjct: 233 MAPPTFSTEEEKSSFEIHRSGVVTFFAVFSMLVATAMALLVKV 275


>09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,
            3667017-3667242,3667328-3667846,3668789-3668863,
            3668963-3669052,3669142-3669222,3672176-3672222,
            3672620-3672685,3673834-3673930,3673983-3674046,
            3674160-3674278,3674448-3674563,3676675-3676708
          Length = 936

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
 Frame = +3

Query: 444  LKARVKA-IRENWNLKYSATYVLCLLKDSGVKPQETVGGSISVIASASPNRPPTNLLTIL 620
            LKA+  + + ++ ++    T  L  +KD+  KP +T        A   PN P  ++L  +
Sbjct: 835  LKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTA-------APQDPNAPLWDMLKKI 887

Query: 621  DTEPQTGIEETLHICVKPF--HYSY---ARDEWLVEW 716
              EP+  +   LH+C   F  H S+      E+L  W
Sbjct: 888  ALEPEDKMRVGLHLCKPEFQAHRSFLISMGQEYLERW 924


>08_02_0911 +
           22530370-22530497,22531083-22531126,22531224-22531267,
           22531428-22531946,22532032-22532257,22532336-22532662,
           22532915-22533165,22533374-22534072
          Length = 745

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
 Frame = +3

Query: 444 LKARVKA-IRENWNLKYSATYVLCLLKDSGVKPQETVGGSISVIASASPNRPPTNLLTIL 620
           LKA+  + + ++ ++    T  L  +KD+  KP +T        A   PN P  ++L  +
Sbjct: 644 LKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTA-------APQDPNAPLWDMLKKI 696

Query: 621 DTEPQTGIEETLHICVKPF--HYSY---ARDEWLVEW 716
             EP+  +   LH+C   F  H S+      E+L  W
Sbjct: 697 ALEPEDKMRVGLHLCKPEFQAHRSFLISMGQEYLERW 733


>07_03_1096 +
           23931862-23931931,23932406-23932549,23932888-23932986,
           23933422-23933498,23933813-23933921,23934973-23935301,
           23935838-23935930
          Length = 306

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 604 LVGGRFGEALAMTDMDPPTVSCGFTPESFSKHRTYVALYF 485
           L+  +FG+ L   D+D    SCG    + S HRT +++Y+
Sbjct: 268 LINKKFGKQLLSIDIDLWLWSCGVQNMALSHHRT-LSIYY 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,106,033
Number of Sequences: 37544
Number of extensions: 531072
Number of successful extensions: 1637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)