Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_K01
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.29 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    29   1.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   1.2  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   2.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.7  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   8.1  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   8.1  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +1

Query: 469 SPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRA 591
           S  IS +ST   N  FH PT    TS S     A  KGV +
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNS 841


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 490 STRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGG*SLRCHXXL 624
           S R+ +P+F    +P ++S + NP  A L   ++    L+ H  L
Sbjct: 196 SNRNGDPKFRFSVSPWISSSNFNPYEASLANFQSDNCKLKSHNSL 240


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
 Frame = +3

Query: 207 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 386
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 387 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 527
                V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = +3

Query: 219 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 392
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 393 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 527
              V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 32/157 (20%), Positives = 52/157 (33%), Gaps = 1/157 (0%)
 Frame = +3

Query: 213  TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 392
            T T   S  + +    +S    Y    + +    +  S P    PVT   C T+  V   
Sbjct: 541  TSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYT 600

Query: 393  GVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKS-PIPYTNHPRLNIHFHQSPER 569
               + +  S+S        +   +T P      + +  S  IP T+  R +  F  S   
Sbjct: 601  STPITSPNSTSS---SSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657

Query: 570  RTKRSSRRGLKPPLSSXAPSAYFTPSSLGMAKGVSPP 680
             T  SS        +S + S Y   ++        PP
Sbjct: 658  STSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPP 694


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 207 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 377
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 378 DVTVEGVNVLATPSSS 425
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 454 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 335
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 189  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 302
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +1

Query: 466 PSPAISATSTRSSN---PRFHTPTTPD 537
           P P+IS T+T SS       H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 270 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 359
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 439 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 305
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 513 IPYT--NHPRLNIHFHQSPERRTKRSSRRGLKPPLSSXAPSA 632
           +PYT  NHP+ +I FH   E      +    KP ++S A +A
Sbjct: 27  LPYTARNHPQFSIWFHNDFEPVKDLKALLKDKPQIASQAVTA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,572
Number of Sequences: 5004
Number of extensions: 56977
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)