Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_K01
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.92
04_03_0497 + 16566601-16566696,16567026-16567102,16567903-165680... 31 1.2
08_02_0875 + 22103903-22106293 30 2.1
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 30 2.8
02_04_0452 + 23044190-23045227 29 3.7
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.7
08_02_1198 + 25204896-25206755 29 4.9
04_01_0041 - 464695-464850,467485-469029 29 6.5
01_05_0227 - 19512866-19514983 29 6.5
01_01_0070 - 542603-542686,542803-543441 29 6.5
05_06_0053 - 25202103-25202510,25202818-25202841 28 8.6
04_03_0806 + 19857675-19859135 28 8.6
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.92
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 475 AISATSTRSSNPRFHTPTTP 534
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>04_03_0497 +
16566601-16566696,16567026-16567102,16567903-16568047,
16568265-16568309,16568338-16569294,16569603-16569896,
16571129-16571242,16571826-16571913,16571995-16572050,
16572250-16572304,16572417-16572460
Length = 656
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 492 NPIIKSPIPYTNHPRLNIHFHQSPERRTKRSSRRGL--KPPLSSXAPSAYFTPSSLGMAK 665
+P+I++PIP N H + E+R++ +G P + + P +++P + G AK
Sbjct: 529 SPMIRTPIPDGAPSLRNQHLGSAQEQRSEHFMLKGATRSPMIRTPIPYGHYSPLTRGKAK 588
Query: 666 GVS 674
S
Sbjct: 589 SSS 591
>08_02_0875 + 22103903-22106293
Length = 796
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 466 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRAGG 597
P+P ++A S R NP+ PDL + +N L A GV G
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGPAG 549
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +1
Query: 457 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINP 561
I PPSPA + S+R S +PR F TP T T+ S +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSP 62
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 410 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 532
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 213 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 386
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 387 VEGVNVLATPSSSRITIGGLALMHQ 461
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>08_02_1198 + 25204896-25206755
Length = 619
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 552 HQSPERRTKRSSRRGLKPPLSSXAPSAYFTPSSLGMAKGVSPPYFQVND 698
H SP++R K +G+ PP ++ SLG+ G+SPPY + +D
Sbjct: 187 HCSPQQR-KYPLDKGVPPPWWPSGNEDWWI--SLGLPMGISPPYRKPHD 232
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 174 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 350
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 351 TVD 359
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 391 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 299
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 495 PIIKSP--IPYTNHPRLNIHFHQSPERRTKRSSRRGLKPPLSSXAPSAYFTPSSLGMAKG 668
P+ ++P +P P + + H+ +R K++S +P LS AP+A + G
Sbjct: 147 PVAEAPAELPPAEAPTKSKNKHRKKNKRGKKASAPAPEP-LSPPAPAALSPADNQADVSG 205
Query: 669 VSPPYFQVNDXSXSF 713
+P F +N + +
Sbjct: 206 PAPSAFDLNGSNRQY 220
>05_06_0053 - 25202103-25202510,25202818-25202841
Length = 143
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 769 GXIGGGDRXMXGMTXNKXXKLXDXSFT*K*GGETPLAMPXDEGVKYADGAXDDNGG 602
G + GGDR + G+T N K+ GGE + + D+ +++ G+ GG
Sbjct: 27 GEVDGGDRGVVGVTGNTTPKVVVGGGG-GLGGENRVVVVGDDALEHEKGSEVGGGG 81
>04_03_0806 + 19857675-19859135
Length = 486
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 492 NPIIKSPIPYTNHPRLNIHFHQSPERR 572
NP + P PY + PRL +H H+ RR
Sbjct: 6 NPPLPLPPPYDSLPRLLLHHHRRLPRR 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,347,782
Number of Sequences: 37544
Number of extensions: 457018
Number of successful extensions: 1356
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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