Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_J24
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.5  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   6.2  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   6.2  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   8.2  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 511 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTXY 645
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 675 LAKTLYTKGSIXRAFAVPMRTEH 607
           +A+ L   GSI   FAVP++ EH
Sbjct: 401 IAELLEILGSIINGFAVPLKEEH 423


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 466 IRFEDTARRGV*LGRYICQRITQVS*GQLSEDRNLAWSKRAKAGLIQMFSTHRDCESTXY 645
           IRF+    + + LG+ +   + +V+  + ++D +     R     I + STH       Y
Sbjct: 282 IRFKSRKLQALKLGKPLVLTLMEVATEETTDDIDEDCPARLALRSIDLLSTHLSPSQVFY 341

Query: 646 RSFSIK-SFSKRCQKSYHR 699
             F    +FS+  Q SY +
Sbjct: 342 PMFEAACAFSQSPQASYRK 360


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 100 GYLKRVIVTPAVYPRLLEFLHVDIQSTGQEITS 2
           G+++R+ V    YP LLE+L++ + S+ + + S
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSSYKYLLS 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,280
Number of Sequences: 5004
Number of extensions: 68144
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)