Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_J14
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 5e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.002
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 0.34
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.93
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.8
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 5.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.1 bits (82), Expect(2) = 5e-04
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +2
Query: 695 GXPPPPPPPXXXGXXXPPPP 754
G PPPPPPP G PPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPP 779
Score = 34.7 bits (76), Expect = 0.019
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 695 GXPPPPPPPXXXGXXXPPPP 754
G PPPPPPP PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778
Score = 33.5 bits (73), Expect = 0.043
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -2
Query: 517 PPPPPPXXXXXXXKKXXFXGPPXXKRGGXXPPXXXPPPPXFXGGG 383
PPPPPP PP G PP PPPP G G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP--PPPPPGVAGAG 774
Score = 30.7 bits (66), Expect = 0.30
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Frame = -2
Query: 523 PPPPP------PPPXXXXXXXKKXXFXGPPXXKR----GGXXPPXXXPPPPXFXGGGXK 377
PPPPP P P GPP G PP PPPP GG +
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Score = 29.1 bits (62), Expect(2) = 0.16
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 701 PPPPPPPXXXGXXXPPPP 754
PPPPPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 701 PPPPPPPXXXGXXXPPPP 754
P PPP P G PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 694 GXPPPPPPP 720
G PPPPPPP
Sbjct: 774 GPPPPPPPP 782
Score = 23.4 bits (48), Expect(2) = 4.5
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 563 PPPPPPXKKXXGG 601
PPPPPP GG
Sbjct: 777 PPPPPPPAVSAGG 789
Score = 21.8 bits (44), Expect(2) = 5e-04
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 548 PPFXXPPPPPP 580
P PPPPPP
Sbjct: 756 PIMGGPPPPPP 766
Score = 21.4 bits (43), Expect(2) = 4.5
Identities = 10/29 (34%), Positives = 10/29 (34%)
Frame = +2
Query: 356 PPXXNFFFXPPPXKXRGGGXXXGGXXPPP 442
PP PPP G G PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 21.0 bits (42), Expect(2) = 0.16
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 563 PPPPPP 580
PPPPPP
Sbjct: 762 PPPPPP 767
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect(2) = 0.002
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 701 PPPPPPPXXXGXXXPPPP 754
PPPPPPP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPP 27
Score = 30.7 bits (66), Expect = 0.30
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 695 GXPPPPPPPXXXGXXXPPPP 754
G PPPPPPP PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPP 26
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 701 PPPPPPPXXXGXXXPPPP 754
PPPPPP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 24.6 bits (51), Expect(2) = 0.002
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 548 PPFXXPPPPPP 580
PP PPPPPP
Sbjct: 5 PPGNPPPPPPP 15
Score = 24.6 bits (51), Expect(2) = 2.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 701 PPPPPPPXXXGXXXPPPP 754
PPPPP PPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Score = 21.0 bits (42), Expect(2) = 2.6
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 563 PPPPPP 580
PPPPPP
Sbjct: 11 PPPPPP 16
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 25.0 bits (52), Expect(2) = 0.34
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 548 PPFXXPPPPPP 580
P F PPPPPP
Sbjct: 942 PAFPPPPPPPP 952
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 701 PPPPPPP 721
PPPPPPP
Sbjct: 945 PPPPPPP 951
Score = 23.8 bits (49), Expect(2) = 0.34
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 563 PPPPPPXKKXXGG 601
PPPPPP GG
Sbjct: 948 PPPPPPLVSAAGG 960
Score = 23.4 bits (48), Expect(2) = 2.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 523 PPPPPPPP 500
P PPPPPP
Sbjct: 905 PTPPPPPP 912
Score = 22.6 bits (46), Expect(2) = 2.1
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -2
Query: 427 PPXXXPPPPXFXGGGXK 377
PP PPPP G K
Sbjct: 945 PPPPPPPPPLVSAAGGK 961
Score = 21.0 bits (42), Expect(2) = 4.4
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 563 PPPPPP 580
PPPPPP
Sbjct: 907 PPPPPP 912
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/53 (26%), Positives = 15/53 (28%)
Frame = +2
Query: 563 PPPPPPXKKXXGGXXXXXXXXXXGGXXXKKXXXXLXXXXXXXXXGXPPPPPPP 721
PPPPPP + G PPPPPPP
Sbjct: 192 PPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 23.8 bits (49), Expect(2) = 2.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 701 PPPPPPP 721
PPPPPPP
Sbjct: 1095 PPPPPPP 1101
Score = 22.2 bits (45), Expect(2) = 2.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 551 PFXXPPPPPP 580
P PPPPPP
Sbjct: 1091 PSAVPPPPPP 1100
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 701 PPPPPPPXXXGXXXPP 748
PPPPPPP PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/67 (23%), Positives = 19/67 (28%), Gaps = 3/67 (4%)
Frame = +2
Query: 563 PPPPPPXKKXXGGXXXXXXXXXXG---GXXXKKXXXXLXXXXXXXXXGXPPPPPPPXXXG 733
PPPPPP ++ G + PPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Query: 734 XXXPPPP 754
PPP
Sbjct: 372 TGRQPPP 378
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 694 GXPPPPPPP 720
G PPPPPPP
Sbjct: 304 GLPPPPPPP 312
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 523 PPPPPPPP 500
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 701 PPPPPPPXXXGXXXPPPP 754
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,944
Number of Sequences: 5004
Number of extensions: 32147
Number of successful extensions: 523
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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