Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_J09
(881 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 94 2e-19
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 94 2e-19
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 83 5e-16
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 75 1e-13
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 66 5e-11
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 66 5e-11
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 66 8e-11
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 62 1e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 57 4e-08
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 57 4e-08
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 57 4e-08
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 57 4e-08
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 57 4e-08
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 56 9e-08
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 56 9e-08
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 55 1e-07
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 55 1e-07
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 55 1e-07
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 55 1e-07
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 54 3e-07
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 46 7e-05
U14102-1|AAC46495.1| 299|Drosophila melanogaster putative rever... 38 0.014
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 34 0.23
AE014297-833|AAN13403.2| 1293|Drosophila melanogaster CG31349-PC... 33 0.52
AE014297-832|AAF54301.3| 2090|Drosophila melanogaster CG31349-PA... 33 0.52
BT010264-1|AAQ23582.1| 1238|Drosophila melanogaster RE27764p pro... 31 1.6
AE014296-3371|AAF51605.2| 1535|Drosophila melanogaster CG5195-PA... 31 1.6
DQ168463-1|AAZ81897.1| 1522|Drosophila melanogaster BBG-LP12 pro... 29 6.4
DQ168462-1|AAZ81896.1| 1842|Drosophila melanogaster PDZ domain-c... 29 6.4
AE014296-2385|AAF49738.1| 1552|Drosophila melanogaster CG9587-PA... 29 6.4
DQ168451-1|AAZ81890.1| 356|Drosophila melanogaster BBG-LP12 pro... 29 8.5
AY094943-1|AAM11296.1| 469|Drosophila melanogaster RH56938p pro... 29 8.5
AY071225-1|AAL48847.1| 1203|Drosophila melanogaster RE26660p pro... 29 8.5
AE014296-3283|AAF49064.2| 1029|Drosophila melanogaster CG7323-PA... 29 8.5
AE014296-982|AAF50759.1| 1203|Drosophila melanogaster CG5249-PA ... 29 8.5
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 94.3 bits (224), Expect = 2e-19
Identities = 51/155 (32%), Positives = 83/155 (53%)
Frame = +1
Query: 205 PGSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFK 384
P + L+LFADD A+Y + S +++ +Q + L +++KW+I INP K+ A+ F
Sbjct: 685 PQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFT 744
Query: 385 RGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVR 564
+ R P +P R R + PI WV +YLG+ D+ +TF+ HI
Sbjct: 745 KRRKPRY---LPDRQLR----------ILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTI 791
Query: 565 DRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+ I+ LYP++ +SKLS+ NK+ ++KT P
Sbjct: 792 MKVNKIICTLYPLINRKSKLSISNKIIIFKTIFNP 826
Score = 37.5 bits (83), Expect = 0.024
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +2
Query: 653 KLVYAPVMTYASVVFAHAARTNLKSLQVIQSRICRIAVGXPW 778
K ++ P++ Y S V+ A+T++K LQ+ Q+++ ++ + P+
Sbjct: 821 KTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPY 862
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 94.3 bits (224), Expect = 2e-19
Identities = 51/155 (32%), Positives = 83/155 (53%)
Frame = +1
Query: 205 PGSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFK 384
P + L+LFADD A+Y + S +++ +Q + L +++KW+I INP K+ A+ F
Sbjct: 633 PQATNCVLSLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWKIKINPNKTNAIFFT 692
Query: 385 RGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVR 564
+ R P +P R R + PI WV +YLG+ D+ +TF+ HI
Sbjct: 693 KRRKPRY---LPDRQLR----------ILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTI 739
Query: 565 DRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+ I+ LYP++ +SKLS+ NK+ ++KT P
Sbjct: 740 MKVNKIICTLYPLINRKSKLSISNKIIIFKTIFNP 774
Score = 37.5 bits (83), Expect = 0.024
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +2
Query: 653 KLVYAPVMTYASVVFAHAARTNLKSLQVIQSRICRIAVGXPW 778
K ++ P++ Y S V+ A+T++K LQ+ Q+++ ++ + P+
Sbjct: 769 KTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPY 810
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 83.0 bits (196), Expect = 5e-16
Identities = 55/150 (36%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Frame = +1
Query: 226 LALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLF--KRGRPP 399
LA FADD + Y R +Q +W R+W I IN +KS V F KR PP
Sbjct: 671 LATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCFTLKRRTPP 730
Query: 400 NITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAF 579
P+ + P+P + AKYLGV LDR +TF H+ +R R
Sbjct: 731 -------------------PVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRA 771
Query: 580 ILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+ + Y +L SRSKLSL NK+T+YK + P
Sbjct: 772 KVAKHYWLLSSRSKLSLSNKLTIYKQILAP 801
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 74.9 bits (176), Expect = 1e-13
Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 1/164 (0%)
Frame = +1
Query: 181 LVCISMIYPGSP-ETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 357
L C + + P + LA +ADD A+ YS + R LQ + TL W ++W + +NP
Sbjct: 659 LPCPNAYHMADPRKALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRWILKVNP 718
Query: 358 TKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMT 537
K+ P + + + +PI L G + S+AKYLG+TLD+ +T
Sbjct: 719 QKTIN---------------PCFTLKTLSPVTAPIELEGVILDQPSQAKYLGITLDKRLT 763
Query: 538 FRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
F PH+K R + +L +L +S ++LR K +Y C+ P
Sbjct: 764 FGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAKRAVYVHCVAP 807
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 110 NSFSXPXQLTAGVPQGSALSPXI 178
NS+S P + AGVPQGS L P +
Sbjct: 629 NSYSIPRVMRAGVPQGSVLGPLL 651
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 66.5 bits (155), Expect = 5e-11
Identities = 47/148 (31%), Positives = 69/148 (46%)
Frame = +1
Query: 226 LALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNI 405
+A +ADDTA+ + + LQ + QW W + IN K A V F N
Sbjct: 676 IATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFA-----NR 730
Query: 406 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFIL 585
T S P ++L G+ I KYLG+TLDR +TF HI ++ +
Sbjct: 731 TGSCP------------GVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKV 778
Query: 586 GRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
R+ ++ R+KLSL KV +YK+ + P
Sbjct: 779 ARMSWLIAPRNKLSLGCKVNIYKSILAP 806
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 66.5 bits (155), Expect = 5e-11
Identities = 47/148 (31%), Positives = 69/148 (46%)
Frame = +1
Query: 226 LALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNI 405
+A +ADDTA+ + + LQ + QW W + IN K A V F N
Sbjct: 478 IATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFA-----NR 532
Query: 406 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFIL 585
T S P ++L G+ I KYLG+TLDR +TF HI ++ +
Sbjct: 533 TGSCP------------GVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKV 580
Query: 586 GRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
R+ ++ R+KLSL KV +YK+ + P
Sbjct: 581 ARMSWLIAPRNKLSLGCKVNIYKSILAP 608
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 65.7 bits (153), Expect = 8e-11
Identities = 49/164 (29%), Positives = 75/164 (45%)
Frame = +1
Query: 178 YLVCISMIYPGSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 357
YL+ + I P + ++ FADDTAI R +L + + + +W WRI +N
Sbjct: 649 YLIYTADI-PTNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWRIKVNE 707
Query: 358 TKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMT 537
K V F R P P+ L P+P + YLGV LDR +T
Sbjct: 708 QKCKHVTFTLNR-----QDCP------------PLLLNSIPLPKADEVTYLGVHLDRRLT 750
Query: 538 FRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+R HI+ + + L+ ++ S S LSL +KV LY + ++P
Sbjct: 751 WRRHIEAKKTQLKLKANNLHWLINSGSPLSLDHKVLLYNSILKP 794
Score = 36.7 bits (81), Expect = 0.042
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 659 VYAPVMTYASVVFAHAARTNLKSLQVIQSRICRIAVGXPW 778
+ P+ TY S ++ +A+ +N+ +Q QS+I R G PW
Sbjct: 791 ILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPW 830
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 61.7 bits (143), Expect = 1e-09
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 2/159 (1%)
Frame = +1
Query: 199 IYPGSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAA 372
IY SP + L +ADDT + S + R + + T W KW I +N K+
Sbjct: 721 IYRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDWADKWGISVNAAKTGH 780
Query: 373 VLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHI 552
V+F + + +P S + + GQ I SK YLGVTLD +T H+
Sbjct: 781 VIF------TLKNDLPTNSMN--------VKIKGQTIKKESKQSYLGVTLDSKLTLSSHV 826
Query: 553 KTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+ + + +L +L RSKL + K+ + K+ + P
Sbjct: 827 TKLLGKYSTAYRKLTWILNGRSKLPTKTKILILKSVLSP 865
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial cds.
).
Length = 964
Score = 56.8 bits (131), Expect = 4e-08
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Frame = +1
Query: 199 IYPGSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAA 372
IY SP + L +ADDT + S + R + + T W KW I +N K+
Sbjct: 593 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 652
Query: 373 VLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHI 552
V++ + + IP + + + GQ I SK YLGV LD +T PH+
Sbjct: 653 VIY------TLKNDIPTN--------LKTMKIKGQAIKKESKQSYLGVILDSKLTLSPHV 698
Query: 553 KTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
V + ++ +L RSKL K+ + K+ + P
Sbjct: 699 TKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSP 737
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 56.8 bits (131), Expect = 4e-08
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Frame = +1
Query: 199 IYPGSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAA 372
IY SP + L +ADDT + S + R + + T W KW I +N K+
Sbjct: 709 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 768
Query: 373 VLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHI 552
V++ + + IP + + + GQ I SK YLGV LD +T PH+
Sbjct: 769 VIY------TLKNDIPTN--------LKTMKIKGQAIKKESKQSYLGVILDSKLTLSPHV 814
Query: 553 KTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
V + ++ +L RSKL K+ + K+ + P
Sbjct: 815 TKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSP 853
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 56.8 bits (131), Expect = 4e-08
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Frame = +1
Query: 199 IYPGSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAA 372
IY SP + L +ADDT + S + R + + T W KW I +N K+
Sbjct: 709 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 768
Query: 373 VLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHI 552
V++ + + IP + + + GQ I SK YLGV LD +T PH+
Sbjct: 769 VIY------TLKNDIPTN--------LKTMKIKGQAIKKESKQSYLGVILDSKLTLSPHV 814
Query: 553 KTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
V + ++ +L RSKL K+ + K+ + P
Sbjct: 815 TKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSP 853
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 56.8 bits (131), Expect = 4e-08
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Frame = +1
Query: 199 IYPGSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAA 372
IY SP + L +ADDT + S + R + + T W KW I +N K+
Sbjct: 671 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 730
Query: 373 VLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHI 552
V++ + + IP + + + GQ I SK YLGV LD +T PH+
Sbjct: 731 VIY------TLKNDIPTN--------LKTMKIKGQAIKKESKQSYLGVILDSKLTLSPHV 776
Query: 553 KTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
V + ++ +L RSKL K+ + K+ + P
Sbjct: 777 TKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSP 815
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 56.8 bits (131), Expect = 4e-08
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 2/159 (1%)
Frame = +1
Query: 199 IYPGSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAA 372
IY SP + L +ADDT + S + R + + T W KW I +N K+
Sbjct: 709 IYHPSPTERIMLSTYADDTIVLSSDILATAATRNNENYLKTFSDWADKWGISVNAAKTGH 768
Query: 373 VLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHI 552
V++ + + IP + + + GQ I SK YLGV LD +T PH+
Sbjct: 769 VIY------TLKNDIPTN--------LKTMKIKGQAIKKESKQSYLGVILDSKLTLSPHV 814
Query: 553 KTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
V + ++ +L RSKL K+ + K+ + P
Sbjct: 815 TKVVGKYLTAYRKMSWILNERSKLPTNTKMLILKSVLSP 853
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 55.6 bits (128), Expect = 9e-08
Identities = 43/145 (29%), Positives = 60/145 (41%)
Frame = +1
Query: 235 FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSS 414
FADDTAI + L + ++ +W WRI IN K V F
Sbjct: 665 FADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFT---------- 714
Query: 415 IPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFILGRL 594
N P+ L IP + YLGV LDR +T+R HI+ L
Sbjct: 715 -------LNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNL 767
Query: 595 YPMLCSRSKLSLRNKVTLYKTCIRP 669
+ ++ +RS LSL K LY + ++P
Sbjct: 768 HWLINARSPLSLEFKALLYNSVLKP 792
Score = 42.3 bits (95), Expect = 9e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 659 VYAPVMTYASVVFAHAARTNLKSLQVIQSRICRIAVGXPW 778
V P+ TY S ++ +A+R+N+ +Q QSRI RI G PW
Sbjct: 789 VLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPW 828
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 55.6 bits (128), Expect = 9e-08
Identities = 43/145 (29%), Positives = 60/145 (41%)
Frame = +1
Query: 235 FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSS 414
FADDTAI + L + ++ +W WRI IN K V F
Sbjct: 665 FADDTAILSRSKCPIKATALLSRHLTSVERWLADWRISINVQKCKQVTFT---------- 714
Query: 415 IPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFILGRL 594
N P+ L IP + YLGV LDR +T+R HI+ L
Sbjct: 715 -------LNKQTCPPLVLNNICIPQADEVTYLGVHLDRRLTWRKHIEAKSKHLKLKARNL 767
Query: 595 YPMLCSRSKLSLRNKVTLYKTCIRP 669
+ ++ +RS LSL K LY + ++P
Sbjct: 768 HWLINARSPLSLEFKALLYNSVLKP 792
Score = 42.3 bits (95), Expect = 9e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 659 VYAPVMTYASVVFAHAARTNLKSLQVIQSRICRIAVGXPW 778
V P+ TY S ++ +A+R+N+ +Q QSRI RI G PW
Sbjct: 789 VLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPW 828
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/148 (26%), Positives = 66/148 (44%)
Frame = +1
Query: 226 LALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNI 405
LA +ADDT I + L Q + +W +KW I IN K+ +LF
Sbjct: 284 LATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSL------ 337
Query: 406 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFIL 585
++ T+ +P + GQ ++K +YLG+ LDR +TF H+ ++ +
Sbjct: 338 --------KKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAY 389
Query: 586 GRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+L ++ S L K+ L+K + P
Sbjct: 390 KKLEWLIGKNSHLPKNAKILLWKQIVSP 417
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/148 (26%), Positives = 66/148 (44%)
Frame = +1
Query: 226 LALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNI 405
LA +ADDT I + L Q + +W +KW I IN K+ +LF
Sbjct: 731 LATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSL------ 784
Query: 406 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFIL 585
++ T+ +P + GQ ++K +YLG+ LDR +TF H+ ++ +
Sbjct: 785 --------KKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAY 836
Query: 586 GRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+L ++ S L K+ L+K + P
Sbjct: 837 KKLEWLIGKNSHLPKNAKILLWKQIVSP 864
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/148 (26%), Positives = 66/148 (44%)
Frame = +1
Query: 226 LALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNI 405
LA +ADDT I + L Q + +W +KW I IN K+ +LF
Sbjct: 731 LATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSL------ 784
Query: 406 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFIL 585
++ T+ +P + GQ ++K +YLG+ LDR +TF H+ ++ +
Sbjct: 785 --------KKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAY 836
Query: 586 GRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+L ++ S L K+ L+K + P
Sbjct: 837 KKLEWLIGKNSHLPKNAKILLWKQIVSP 864
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/148 (26%), Positives = 66/148 (44%)
Frame = +1
Query: 226 LALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNI 405
LA +ADDT I + L Q + +W +KW I IN K+ +LF
Sbjct: 731 LATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSKKWDIAINAKKTGHILFSL------ 784
Query: 406 TSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFIL 585
++ T+ +P + GQ ++K +YLG+ LDR +TF H+ ++ +
Sbjct: 785 --------KKEQTNIYTPPLINGQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAY 836
Query: 586 GRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+L ++ S L K+ L+K + P
Sbjct: 837 KKLEWLIGKNSHLPKNAKILLWKQIVSP 864
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 54.0 bits (124), Expect = 3e-07
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 2/159 (1%)
Frame = +1
Query: 199 IYPGSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSAA 372
IY SP + L +ADDT + S + R + + + W KW I +N K+
Sbjct: 709 IYRPSPTERIMLSTYADDTIVLSSDTLATAATRNNENYLKSFSDWADKWGISVNAAKTGH 768
Query: 373 VLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHI 552
V+F + + +P +++ + + GQ I SK YLGV LD +T H+
Sbjct: 769 VIF------TLKNDLP--------TSLRTMKIKGQVIKIESKQSYLGVILDSKLTLSSHV 814
Query: 553 KTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 669
+ + ++ +L RSKL + K+ + K+ + P
Sbjct: 815 TKLMGKYTTAYRKMTWILNRRSKLPTKTKMLILKSVLSP 853
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 46.0 bits (104), Expect = 7e-05
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +1
Query: 472 GQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 651
G+ +P+V +YLG+T+ GM F HI ++R R ++G L +L + S R + T+Y
Sbjct: 725 GRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGALARVLRADWGFSPRARRTIY 784
Query: 652 KTCIRP 669
+ P
Sbjct: 785 DGLMAP 790
>U14102-1|AAC46495.1| 299|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 299
Score = 38.3 bits (85), Expect = 0.014
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 472 GQPIPWVSKAKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLY 651
GQ I SK YLGV LD +T H+ + + ++ +L RSKL + K+ +
Sbjct: 3 GQVIKIESKQSYLGVILDSKLTLSSHVTKLMGKYTTAYRKMTWILNRRSKLPTKTKMLIL 62
Query: 652 KTCIRP 669
K+ + P
Sbjct: 63 KSVLSP 68
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 34.3 bits (75), Expect = 0.23
Identities = 34/135 (25%), Positives = 53/135 (39%)
Frame = +1
Query: 190 ISMIYPGSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINPTKSA 369
+S+ P E H FADD AI + + L +A+ +W K + I K+
Sbjct: 632 LSISKPRGVELHC--FADDVAITAVAKTIPELQDISNVAITAAIEWLEKVGLKIAAHKTE 689
Query: 370 AVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPH 549
VL S R + + + + G I KYLGV +DR ++F+ H
Sbjct: 690 VVLL---------------SSRKSVECMR-VEVKGVEIASAETLKYLGVLIDRRLSFKAH 733
Query: 550 IKTVRDRAAFILGRL 594
+ +AA L
Sbjct: 734 ARYASKKAAMTAAAL 748
>AE014297-833|AAN13403.2| 1293|Drosophila melanogaster CG31349-PC,
isoform C protein.
Length = 1293
Score = 33.1 bits (72), Expect = 0.52
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 298 QIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQ 477
QIA++ W+RK R I+ +S AV + P ++P R T S +++G
Sbjct: 759 QIALSDEESWYRKLRDSIDLQQSGAVWMSESKVP-YDHAVPANPNRRQTMDSSKYSIYGT 817
Query: 478 PIP 486
+P
Sbjct: 818 NVP 820
>AE014297-832|AAF54301.3| 2090|Drosophila melanogaster CG31349-PA,
isoform A protein.
Length = 2090
Score = 33.1 bits (72), Expect = 0.52
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 298 QIAVATLGQWFRKWRIDINPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQ 477
QIA++ W+RK R I+ +S AV + P ++P R T S +++G
Sbjct: 759 QIALSDEESWYRKLRDSIDLQQSGAVWMSESKVP-YDHAVPANPNRRQTMDSSKYSIYGT 817
Query: 478 PIP 486
+P
Sbjct: 818 NVP 820
>BT010264-1|AAQ23582.1| 1238|Drosophila melanogaster RE27764p protein.
Length = 1238
Score = 31.5 bits (68), Expect = 1.6
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = +1
Query: 358 TKSAAVLFKRGRP-PNITSSIPLRS---------RRANTSAVSPITLFGQPIPWVSKAKY 507
T SA +R +P P I S+I L + R+ + SP T FG P+P VS ++
Sbjct: 1035 THSAISTSQRPKPTPTINSNIDLNNTILHTKYFNRKPQPGSGSPFTFFGYPLPSVSLGRF 1094
Query: 508 LGVTLDRG 531
G DRG
Sbjct: 1095 FGFG-DRG 1101
>AE014296-3371|AAF51605.2| 1535|Drosophila melanogaster CG5195-PA
protein.
Length = 1535
Score = 31.5 bits (68), Expect = 1.6
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Frame = +1
Query: 358 TKSAAVLFKRGRP-PNITSSIPLRS---------RRANTSAVSPITLFGQPIPWVSKAKY 507
T SA +R +P P I S+I L + R+ + SP T FG P+P VS ++
Sbjct: 1035 THSAISTSQRPKPTPTINSNIDLNNTILHTKYFNRKPQPGSGSPFTFFGYPLPSVSLGRF 1094
Query: 508 LGVTLDRG 531
G DRG
Sbjct: 1095 FGFG-DRG 1101
>DQ168463-1|AAZ81897.1| 1522|Drosophila melanogaster BBG-LP12
protein.
Length = 1522
Score = 29.5 bits (63), Expect = 6.4
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 282 ASSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEH 404
+SS++P SS TV+P+VA + QP+E+R L + + H
Sbjct: 846 SSSSSP--SSCSSTVIPDVAFKLQPYEERDDILSEPITTIH 884
>DQ168462-1|AAZ81896.1| 1842|Drosophila melanogaster PDZ
domain-containing proteinBBG-LP10 protein.
Length = 1842
Score = 29.5 bits (63), Expect = 6.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 285 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEH 404
+S++ SS TV+P+VA + QP+E+R L + + H
Sbjct: 64 TSSSSSSSSCSSTVIPDVAFKLQPYEERDDILSEPITTIH 103
>AE014296-2385|AAF49738.1| 1552|Drosophila melanogaster CG9587-PA
protein.
Length = 1552
Score = 29.5 bits (63), Expect = 6.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 285 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEH 404
+S++ SS TV+P+VA + QP+E+R L + + H
Sbjct: 859 TSSSSSSSSCSSTVIPDVAFKLQPYEERDDILSEPITTIH 898
>DQ168451-1|AAZ81890.1| 356|Drosophila melanogaster BBG-LP12
protein.
Length = 356
Score = 29.1 bits (62), Expect = 8.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 285 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQK 386
+S++ SS TV+P+VA + QP+E+R L +
Sbjct: 318 TSSSSSSSSCSSTVIPDVAFKLQPYEERDDILSE 351
>AY094943-1|AAM11296.1| 469|Drosophila melanogaster RH56938p
protein.
Length = 469
Score = 29.1 bits (62), Expect = 8.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 427 SRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIK 555
S+ ANT +V P+ GQ +P ++ V L RGM F K
Sbjct: 336 SKSANTLSVQPMNHLGQSLPNLNMHHSHTVPLRRGMAFSTSTK 378
>AY071225-1|AAL48847.1| 1203|Drosophila melanogaster RE26660p
protein.
Length = 1203
Score = 29.1 bits (62), Expect = 8.5
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +3
Query: 354 PHEKRSGALQKGSPSEHHFEHPTP**ARKHLRR*SHHSLWPAHSVGLEGQISRRHPRQRD 533
P E++SGA+ K + HH H P H H P ++S R R R
Sbjct: 18 PQEQQSGAIMKAANQPHHPAHSHP---LNHPHPHQHAQPHPHPHPHPHHKLSARRARSRS 74
Query: 534 DIPSPYKNGTR 566
SP +G +
Sbjct: 75 RSRSPTPDGNQ 85
>AE014296-3283|AAF49064.2| 1029|Drosophila melanogaster CG7323-PA
protein.
Length = 1029
Score = 29.1 bits (62), Expect = 8.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 427 SRRANTSAVSPITLFGQPIPWVSKAKYLGVTLDRGMTFRPHIK 555
S+ ANT +V P+ GQ +P ++ V L RGM F K
Sbjct: 896 SKSANTLSVQPMNHLGQSLPNLNMHHSHTVPLRRGMAFSTSTK 938
>AE014296-982|AAF50759.1| 1203|Drosophila melanogaster CG5249-PA
protein.
Length = 1203
Score = 29.1 bits (62), Expect = 8.5
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +3
Query: 354 PHEKRSGALQKGSPSEHHFEHPTP**ARKHLRR*SHHSLWPAHSVGLEGQISRRHPRQRD 533
P E++SGA+ K + HH H P H H P ++S R R R
Sbjct: 18 PQEQQSGAIMKAANQPHHPAHSHP---LNHPHPHQHAQPHPHPHPHPHHKLSARRARSRS 74
Query: 534 DIPSPYKNGTR 566
SP +G +
Sbjct: 75 RSRSPTPDGNQ 85
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,344,266
Number of Sequences: 53049
Number of extensions: 774171
Number of successful extensions: 2090
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -