Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_J07
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    28   1.5  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    28   2.0  
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    27   4.7  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   8.2  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 626 RQYLVQI-PGALPLVLLAATNWYGDHXEQLIGLLRLWXKTSPLNAMHL 766
           RQY     P    L  +  T+ + DH   L+ +L+ W K +  N+MH+
Sbjct: 452 RQYGTNTEPMLRKLKAIFITHLHSDHYLGLLNVLQAWNKANTNNSMHI 499


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 411 HIPLSILKFLYTHTPGSSGLAEKKTNRRIYL*RIFHRSTVWT 536
           HIP S +KF Y +TP  S  + K  ++R+ L     +  VWT
Sbjct: 407 HIPNSSIKFNYDYTPPKSATSHK--HKRVDL-LASRKENVWT 445


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 534 SKLSNDGRSFRDIFFCLSSSPLVHLTPVCAYKGISIL 424
           +K S+D +  R+IF  L  SPL + T  C Y   S+L
Sbjct: 35  AKPSHDDKIPREIFLKLQDSPLYNSTTPCIYALDSLL 71


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 493 EYISEGSSIVRQFGRTHTVSTATPHRAGRLSEDAYRMXR--GHVGETAVPGTDP 648
           E I +GS+ V    +TH V  A    A  LS    ++ R   H+G  A+ G  P
Sbjct: 27  EAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIG-IAIAGLAP 79


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 685 IRSG*QHQRQSAWDLYQVLPFLPHDLXTFCRHPLI 581
           +R+  +H+R+ +  +Y V P++ HDL     +P +
Sbjct: 104 VRADKKHRRRGS--IYMVTPYMDHDLSGLLENPSV 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,649
Number of Sequences: 5004
Number of extensions: 65159
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)