Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_J07
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0269 - 2865731-2865752,2866627-2868605                           29   6.5  
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776...    28   8.6  

>10_01_0269 - 2865731-2865752,2866627-2868605
          Length = 666

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 300 LTLMGCYRPVITFYHCGRLVATGGPARLLILCTHLQHHI---PLSILKFLYTHTPGSSGL 470
           LT   C    +   HC  +V +GG AR L+   +L   +    L +L F+  H P S  L
Sbjct: 558 LTKFACNENHLHVNHCKAIVDSGG-ARHLVQLVYLGDEVQIEALILLCFIALHVPESEEL 616

Query: 471 AE 476
           A+
Sbjct: 617 AQ 618


>01_05_0699 -
           24376987-24377154,24377259-24377406,24377530-24377645,
           24377743-24377925,24377998-24378186,24378273-24378497,
           24378514-24378759,24378836-24378983,24379126-24379241,
           24379441-24379497,24379735-24379923,24380001-24380150,
           24380323-24380404,24380484-24380601,24380713-24380899,
           24381044-24381138,24381223-24381277,24381376-24381567,
           24381657-24381853,24382534-24382684
          Length = 1003

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = +2

Query: 437 PLYAHTGVKW---TSGEEDKQKNISLKDLPSFDSLDGHTQSQLLHLIEQGAYQRMPTECX 607
           P Y    + W   T+G+E K+      DL S +      + QL+HL   G ++  P    
Sbjct: 297 PDYVPEAIGWEGETAGKESKEMKPKEIDLSSINPASQDEEKQLMHLKLMG-WRHFPVNLD 355

Query: 608 EV--MWEKRQYLVQIPGALPLVLLAATNWYGD 697
           ++   W  R+  V   G + +  L   + Y D
Sbjct: 356 KLAGTWGVRKLTVVDDGCVSMSDLVKQSLYTD 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,006,132
Number of Sequences: 37544
Number of extensions: 459191
Number of successful extensions: 1215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)