Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_I16
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       78   9e-17
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              25   0.66 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              25   0.66 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 78.2 bits (184), Expect = 9e-17
 Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
 Frame = +2

Query: 221 NVNEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGS 397
           NV+ D     I +F+  G+ +++ +  ++  +KKP+ +QK A+P+ + G+D++  A+TGS
Sbjct: 185 NVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGS 244

Query: 398 GKTGAFALPILQALLEN------PQRYF---ALMLTPTRELAFQISEQFEALGAXMGVKC 550
           GKT AFA+PI+  LLE          Y     ++++PTREL  QI +Q         +K 
Sbjct: 245 GKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKT 304

Query: 551 AVXVGGMDMVAQALMLSRNLT*SSPLLGRLVD 646
            V  GG  ++ Q   LS          GRL+D
Sbjct: 305 VVAYGGTSVMHQRGKLSAGCHILVATPGRLLD 336


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 113 FCIPQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNE---DTEDDK 250
           FCI  N   +E++        +    +S ++Q   +++NE   D ED+K
Sbjct: 10  FCICVNAMTIEELKIQLHDVQEICKTESGIDQQTVDDINEVNFDVEDEK 58


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 113 FCIPQNNDNLEKMTADKESYGDETNQDSEVEQTPTENVNE---DTEDDK 250
           FCI  N   +E++        +    +S ++Q   +++NE   D ED+K
Sbjct: 10  FCICVNAMTIEELKIQLRDVQEICKAESGIDQQTVDDINEVNFDVEDEK 58


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 220 FGWSLFHLTILVGFVSIAFLV 158
           FGW +  L +++  VSI   +
Sbjct: 397 FGWQMICLIVVIALVSIIMYI 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,475
Number of Sequences: 438
Number of extensions: 5932
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)