Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_I08
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 254 8e-68
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 1.0
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr... 31 1.0
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 29 5.5
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 5.5
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 29 5.5
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 254 bits (621), Expect = 8e-68
Identities = 118/206 (57%), Positives = 148/206 (71%)
Frame = +1
Query: 211 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 390
VF+ PIRPDLV+ + + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26 VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85
Query: 391 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 570
SGQGAFGNMCRGG MFAP K +RRWH QARGH+I++
Sbjct: 86 SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145
Query: 571 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 750
+ E+PLVV+DKV+ KTK+AV+FLRR W+DI KVY S+R RAGKGK+RNR+ Q+ G
Sbjct: 146 VAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLG 205
Query: 751 PLIIFNKDQGLTRAFRNIPGVELLNV 828
P++I+ +D RAFRNIPGV+++NV
Sbjct: 206 PVVIYGQDAECARAFRNIPGVDVMNV 231
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 1.0
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +1
Query: 271 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 441
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 442 PTKP 453
KP
Sbjct: 197 APKP 200
>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
protein F18C5.3 protein.
Length = 1490
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -2
Query: 831 CNIQELHTGDVAEGASQTLILVEDYEGPLTLDTTTVAHFTLTSTKTLRLVHL 676
CN+ H+ DV E A +TL+ + GP L + + +LT TK + VH+
Sbjct: 639 CNLMMTHSYDVRETARKTLVQIVKCLGPKYL-ASVITEISLTMTKGFQ-VHV 688
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -2
Query: 741 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 589
L+ +VA L TKT+RL+ + IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 597 GYNQGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 457
GY G + N+ N VS+ + + ++A +S G G S +E+D P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 592 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 768
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 769 KD 774
KD
Sbjct: 473 KD 474
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 427 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 344
HHD +++H + ++ HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 592 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 768
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 769 KD 774
KD
Sbjct: 473 KD 474
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,281,024
Number of Sequences: 27780
Number of extensions: 373421
Number of successful extensions: 1133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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