Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_I07
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    29   1.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    29   1.1  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.6  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   4.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   4.5  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   5.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   5.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   7.8  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   7.8  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 350 KEVPAKTPMAGQHLRQPE--GEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQ 186
           + +P+K P  GQH RQ     + +    H +R++ T     TE G+  RQ + P  Q
Sbjct: 678 ESIPSKQPTEGQHARQESLPSQQTTETKH-LRKESTPSKQPTE-GQHTRQESLPSQQ 732


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 179 PPRVEPPRSNYTFAGAPFPPRAEVATPP 96
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/67 (25%), Positives = 24/67 (35%)
 Frame = +1

Query: 457 NAPPSSRSLERNSRCRASWLRCSAATRPGRRCSTSASPPYXXXXXXXEKRKTLPFSAPIR 636
           N  P  R+     RCR   +RC+ +  PG+ C                 R     SAP+ 
Sbjct: 5   NTGPRRRTAVACDRCRRRKIRCTGSDIPGQPCLACQKAHADCHFSTTSWRACRKKSAPLH 64

Query: 637 XRXTGGR 657
              T G+
Sbjct: 65  CPSTNGK 71


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 453 EQRAALVAVIGEELSLPRVVAT---MLGSDASWKAMLDFCESTISXKEAAXRKKENSSLF 623
           + +A  + VIG+ L LP+ ++T   +L S+      ++F  ST S      ++  +SS  
Sbjct: 750 QHQAIRIHVIGDILKLPQPISTWNKLLDSECHRNPNMEFL-STFSKNYLKPQEFGSSSSL 808

Query: 624 RTDPSPSN 647
              P PSN
Sbjct: 809 TVIPMPSN 816


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 565 SQKSSIAFQDASLPSIVATTRGSESSSPMTATRAARCSSNP 443
           S + ++AFQ   L  +++  R + SS+P T  R++    NP
Sbjct: 218 SPEDTVAFQSVELQKVISNNRLNSSSTPPT-PRSSSSIFNP 257


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 580  CDMVDSQKSSIAFQDASLPSIVATTRGSESSS 485
            CDM+D+Q   +A    S  S  +  RG++S+S
Sbjct: 1063 CDMMDAQVRDLANAAESQESFYSKARGNDSTS 1094


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 616 EEFSFFRSAASXCDMVDSQKSSIAFQDASLPSIV--ATTRGSESSSPMTATRAARCSSN 446
           ++F+    AAS      S  SS+     S  S    +TT  S SSS  +++ +++ SS+
Sbjct: 106 QQFNIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSS 164


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -1

Query: 332 TPMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRS 153
           TP+  +HL+  +         P+ + + D  D         Q   P++Q    R EP  S
Sbjct: 104 TPLNNKHLKSQD--------QPLSDSQLDTGDSPATSETTVQDYNPQVQ-SYCRPEPLSS 154

Query: 152 NYTFAGAPFPP 120
           N+  +  PFPP
Sbjct: 155 NHVRSCPPFPP 165


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 631 SVRKREEFSFFRSAASXCDMVDSQKSSIAFQDASLPSI 518
           S+   E +S   S  S C ++  + SS+ FQ+  LP I
Sbjct: 720 SLNVSEGYSLAESVISECMILAGRVSSLFFQEHKLPGI 757


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
 Frame = -1

Query: 302 PEGEASAVAAH--PVREDRTDRLDGTEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 144
           P   AS + ++  PV E      +   +G    R RQ  R R    P  PRV  P   Y 
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270

Query: 143 FAGAPFPPRAEVATPPVIGS 84
                +PP    A P   GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 706 GSPPPTGAGXYGXIPASGPR 647
           G PP TGA  YG    SGP+
Sbjct: 83  GPPPNTGANSYGNPNYSGPQ 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,628
Number of Sequences: 5004
Number of extensions: 46415
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)