Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_I05
         (946 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    30   2.3  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   4.1  
07_01_0479 + 3606663-3607448                                           29   7.1  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   9.4  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   9.4  
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159     28   9.4  

>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = -3

Query: 497 AQLSKLHRNWSANVQALYPGDGAVIRYTGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSA 318
           A+L  +   ++A  +   P   +    T + S    GGCS    +   PP AFRG+  + 
Sbjct: 32  AELQAIEAAYAAAKRRRLPDWPSPNPVTASASASASGGCSPAPPWAPSPP-AFRGNVKAR 90

Query: 317 AAPFXLRSNSVVCRSNS 267
             P     + V CR+ S
Sbjct: 91  YQPVMFNGSIVYCRTPS 107


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 244 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 155
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
 Frame = -1

Query: 916 GXXPXDPXXFXAXXXPXXXRAXPLXPXXXRVXXAXPXGXPXGPXPGGXPPP----TXXPP 749
           G  P  P        P      P+ P   +V    P G P G  PG  PPP       PP
Sbjct: 192 GVPPAFPGGPPPPPGPFMRGPPPMGPP--QVRPGMPGGPPPGMRPGMPPPPFRPGMPPPP 249

Query: 748 XHXLXPGAXXPK 713
                PG   P+
Sbjct: 250 PGPQQPGQNPPQ 261


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 116 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 271
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 414 GRGERSPRRWLQPRLAVPRQASTSVPRTP 328
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
          Length = 400

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -1

Query: 850 PLXPXXXRVXXAXPXGXPXGPXPGGXPPPTXXPPXHXLXP 731
           P  P   RV    P   P  P     PPP   PP   L P
Sbjct: 13  PPPPVPVRVPVPEPQPEPETPQASPSPPPAPDPPTPLLFP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,841,168
Number of Sequences: 37544
Number of extensions: 434102
Number of successful extensions: 1706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)